Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00552 ATGGGTTGTATCCATACAAAATGTTGCTGTCGCTACCCAAAATCGTTGGTTGGAGAATCTCAAGACTTTCGACAAGGGGTTCCTTACTGTCTTCAAGATAAGAACACTGTGATAGAGAAATCATTGGAGATGATTCCTGTTGCTTCCCACAACTATCATTTGGAATATTTGGTTCTAGCTCAGCGTGGTTACTACCCTGAATCTCCTGATAAAGAAAATCAAGACAGTTTCTGCATTAGAACAAACATTCAAGGTAACCCAAATGCTCATTTCTTTGGTGTTTTTGATGGACATGGTCAATTTGGAATGCAGTGTTCAAACTTTGTGAAAGATAGACTAATAGAAAAGCTATGTAATGATCCCACATTGTTAGATGATCCTATACAAGCTTATAATTCAGCATTTTTGTCTACAAATGATGAGTTACATACAAGTGAGATTGATGATTCCATGAGTGGAACAACTGCAATTACAGTTCTTGTTGTTGGGGATACTCTGTATGTAGCTAATGTTGGTGATTCAAGAGCTGTAATTGCAGTCAAAGAAGGGAATTGTGTTCTGGCTAAGGACTTGTCAAATGATCAAACACCATTTAGAAAAGATGAGTATGAGAGAGTTAAGCTTTGTGGGGCTAGAGTTTTGAGTGTTGATCAAGTGGAAGGACTTGTGGATCCTGATATTCAGTGCTGGGGAGACGAAGAAAGTCAAGGCGGCGATCCACCTCGGCTGTGGGTTCAAAATGGATTGTATCCTGGGACTGCATTTACTAGGAGTATTGGTGATAGTACTGCTGAGAAAATCGGTGTAAATGCTGTTCCTGAGGTCTTAGTTCTTCAGCTTAATCCCAATCATCTTTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTCCTTTCAAGTCAAACTGTTGTTGATATGGCATCAAGTTATGCAGATCCTCAAGATGCTTGCACTGCCATTGCTGCCGAGTCGTATAAACTATGGATGGAACATGAAAATCGAACCGATGATATAACGATCATTGTTGTTCAAATCAAAGGCTTGTCTAATTCAGGTGCTGATAATAATCCTTCCAGCAACGGGCTGGAGACTGCTTCTTTGAGAATTGATTTCTCAGATCTACCCACTGAACCGAACACTCAACCTGTTGCTGTGACAAATCGAAACCCAGCGATCGTGGTTCCAATGCTGAATAATCAGACATCTTTATAA 1212 40.1 MGCIHTKCCCRYPKSLVGESQDFRQGVPYCLQDKNTVIEKSLEMIPVASHNYHLEYLVLAQRGYYPESPDKENQDSFCIRTNIQGNPNAHFFGVFDGHGQFGMQCSNFVKDRLIEKLCNDPTLLDDPIQAYNSAFLSTNDELHTSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKEGNCVLAKDLSNDQTPFRKDEYERVKLCGARVLSVDQVEGLVDPDIQCWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEKIGVNAVPEVLVLQLNPNHLFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIVVQIKGLSNSGADNNPSSNGLETASLRIDFSDLPTEPNTQPVAVTNRNPAIVVPMLNNQTSL* 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4746163 4750065 + CsaV3_6G005520.1 Csa06g00552 532179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00552 403 SMART PP2C_4 56 343 IPR001932 -
Csa06g00552 403 SUPERFAMILY PP2C-like 47 347 IPR036457 -
Csa06g00552 403 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 39 359 - -
Csa06g00552 403 Pfam Protein phosphatase 2C 74 324 IPR001932 -
Csa06g00552 403 Gene3D - 46 347 IPR036457 -
Csa06g00552 403 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Csa06g00552 403 CDD PP2Cc 71 345 IPR001932 -
Csa06g00552 403 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Csa06g00552 403 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 39 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00552 Csa-Chr6:4746163 Csa06g01632 Csa-Chr6:14302753 8.56E-143 dispersed
Csa01g01647 Csa-Chr1:12225796 Csa06g00552 Csa-Chr6:4746163 1.42E-97 wgd
Csa03g01389 Csa-Chr3:10409924 Csa06g00552 Csa-Chr6:4746163 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00552 - - csv:101217134 824.313