Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00563 ATGAGAGCTTCAAATCCCATCATTTCTGTACTGCTTTTCACTACTCTTCTTGCCCTTCAGGTTGTCAATGGAGCTTTGGTCAATAATTTCTATAGGAGAACCTGCCCTCAAGCTGAGAGAATCGTTCAAGACGTCACCTTCCGTCTCGTTCGATCCAATCCTAGACTCGGCGCACAGCTTCTTAGACTTCAATTTCATGATTGTTTCGTTCGGGGATGTGATGCATCTATTCTATTAGATACGGTTGGAACAAATCAATCGGAGAAGGAAGCAAGGCCCAACCTATCACTATTAGGGTTTAACGAAATTGACCAAATCAAATCCGAGGTTGAGAAAGCTTGTAGTGGAGTTGTTTCTTGTGCTGATATTCTTGCTCTAGCTGCCCGTGATGCAGTTTCCTTTCCCTTCAAAAATCGACCACGCTGGCCAGTCTTAACGGGAAGAAGAGATGGAACGATTTCACGATCATCAGAAGTTAGCGGCAATATCCCATCGCCGTTCTCCGACTTTGCCACTCTTAAGCAAATTTTCGAGAATAAAAGGCTAAATGTTATTGATCTAGTTATTTTATCAGGTGGTCACACACTTGGAGAAGCTCATTGTGGCACTTTCTCAAGGAGGTTATACAACTTCACAGGCAAAGGAGACGCAGATCCTTCATTAGATCCAAGATATGCAGATTTTCTTAGAACAAAGTGTCCAAATCCAGCTGATCCTTCCATTACAGTTGAAATGGATCCAAGAAGTTCTCGTTCTTTCGACTCCAACTATTTCAAAATTCTCACACAACATAAGGGTTTGTTTCAATCCGACGCTGCGCTTCTCAATGACACTTCCTCCTCCCGGCTCGTCAGGTCGTTGCAGAATCCAAAGGTTTTCTCTTTTAGCTTTGCTAGTTCCATGTTGAAGATGGCAGCCATTGAAGTCCTCACTGGAAATAATAATGGTGAAATTAGGAAACAATGTCGTTTTGTTAATTAA 981 42.3 MRASNPIISVLLFTTLLALQVVNGALVNNFYRRTCPQAERIVQDVTFRLVRSNPRLGAQLLRLQFHDCFVRGCDASILLDTVGTNQSEKEARPNLSLLGFNEIDQIKSEVEKACSGVVSCADILALAARDAVSFPFKNRPRWPVLTGRRDGTISRSSEVSGNIPSPFSDFATLKQIFENKRLNVIDLVILSGGHTLGEAHCGTFSRRLYNFTGKGDADPSLDPRYADFLRTKCPNPADPSITVEMDPRSSRSFDSNYFKILTQHKGLFQSDAALLNDTSSSRLVRSLQNPKVFSFSFASSMLKMAAIEVLTGNNNGEIRKQCRFVN* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4818821 4820985 - CsaV3_6G005630.1 Csa06g00563 532190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00563 326 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
Csa06g00563 326 SUPERFAMILY Heme-dependent peroxidases 26 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Csa06g00563 326 Pfam Peroxidase 44 288 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g00563 326 ProSiteProfiles Plant heme peroxidase family profile. 25 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g00563 326 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g00563 326 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g00563 326 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g00563 326 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g00563 326 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g00563 326 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g00563 326 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g00563 326 PRINTS Plant peroxidase signature 299 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g00563 326 PANTHER PEROXIDASE 25-RELATED 16 324 IPR000823 GO:0004601|GO:0006979|GO:0020037
Csa06g00563 326 Gene3D - 29 326 - -
Csa06g00563 326 CDD secretory_peroxidase 26 325 IPR033905 GO:0004601|GO:0042744
Csa06g00563 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Csa06g00563 326 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g00563 326 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g00563 326 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g00563 326 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g00563 326 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Csa06g00563 326 Gene3D Peroxidase, domain 2 164 304 - -
Csa06g00563 326 PANTHER PEROXIDASE 16 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02696 Csa-Chr2:23513034 Csa06g00563 Csa-Chr6:4818821 2.67E-102 dispersed
Csa06g00563 Csa-Chr6:4818821 Csa07g00538 Csa-Chr7:3952110 6.93E-85 dispersed
Csa06g00563 Csa-Chr6:4818821 Csa07g00375 Csa-Chr7:2787973 4.89E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00563 K00430 - csv:101215642 647.891