Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g00570 | ATGGCTCCTGAAATGGTGGTCGAATCGAGCTTGTCGATGGTGGATTTTGGGAAGGAGTTGGTGGCGGATCATACTTCGGTAGTTTCTTTGAACTTATTTGTAGCTCTTCTTTGCGGTTGCATTGTTATTGGCCATTTGTTAGAGGAAAATAGATGGATTAACGAGTCCATCACAGCCCTTGTCATTGGATTGTGTACCGGCATCATAATACTGGTAACAACTAGAGGGAAAAGCTCGCATTTATTTTTGTTCAATGAAGAGCTCTTTTTCATTTATCTCCTTCCGCCTATCATTTTTAATGCCGGTTTCCAAGTCAAGAAGAAGCAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCGTTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAAAAAATGAATATCGGTTCCCTTGATCTTGGAGATTATCTAGCCATTGGAGCAATTTTTTCTGCAACAGACTCTGTTTGCACCTTACAGGTTCTTAATCAGGACGAGACGCCTCTTCTGTATAGCCTGGTTTTTGGGGAAGGTGTTGTAAATGATGCCACATCGGTTGTGCTATTCAATGCAATCCAAAACTTTGATGTTTCTCACATGAATTCAAGCATAGTTCTGCAATTCATTGGGAACTTTTTGTATCTGTTCCTTGCAAGTACTGTACTGGGAATTTTAGTTGGCCTCCTTAGTGCATACATAATTAAGAAGCTCTACTTTGGCAGACACTCTACTGATCGTGAAGTTGCTCTTATGATACTCATGGCGTATTTCTCTTATATGCTAGCTGAACTCTTCTATTTAAGTGCAATTCTCACTGTATTCTTTTGCGGCATTGTTATGTCTCACTATACATGGCATAACGTGACTGAAAGTTCAAGAGTCACTACAAAGCATGCTTTTGCCACCCTTTCATTTGTCGCTGAAATCTTTATCTTTCTTTACGTTGGCATGGATGCTCTAGATATCGAAAAGTGGAGATTTGTTAGCCACAGTCCTGGAAAATCAATTGGGGTGAGCTCAATACTGTTGGGATTGGTTCTGGTTGGAAGAGCAGCATTCGTTTTTCCTTTGTCCTCCTTGTCCAATCTGACCAAGAAGTTCTCGCATGAGAAACTCAACTTGGAGCAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGAGCTGTATCGATGGCACTTGCATATAATCAGTTCACCAGGTCAGGGCACACCCATCTACCAGGCAATGCAATCATGATCACTAGTACCATCACAGTTGTGCTTTCCAGTACAGTGGTATTTGGAATGATGACGAAACCACTAATAGGAATATTGCTACCCCAACCAAAATACACAATGAGCATGCTCTCTTCCGAACCTTCTTCTCCAAAATCCTTCACTATCCCACTCCTCGATAATGACCAAAATACCCCTTCCCCTCTTGACCTCTTTCTCAGAATCCCATCCCATACTGTCCACCATTACTGGCGAAGATTTGACGACGCCTTCATGCGACCCGTCTTCGGAGGACGCGGCTTTGTGCCCTTCGTCCCAGGCTCCCCAACAGAAGACCCAACACAACAATGGCAGACTGAGGGAGCAGAAGCCATTGATGAAAACAAATCCATTCTTATTCAAACTCGAAGATAG | 1662 | 42.78 | MAPEMVVESSLSMVDFGKELVADHTSVVSLNLFVALLCGCIVIGHLLEENRWINESITALVIGLCTGIIILVTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNFDVSHMNSSIVLQFIGNFLYLFLASTVLGILVGLLSAYIIKKLYFGRHSTDREVALMILMAYFSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSHSPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKFSHEKLNLEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVVFGMMTKPLIGILLPQPKYTMSMLSSEPSSPKSFTIPLLDNDQNTPSPLDLFLRIPSHTVHHYWRRFDDAFMRPVFGGRGFVPFVPGSPTEDPTQQWQTEGAEAIDENKSILIQTRR* | 554 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4886077 | 4894368 | - | CsaV3_6G005700.1 | Csa06g00570 | 532197 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g00570 | 553 | Gene3D | - | 150 | 201 | - | - | |
Csa06g00570 | 553 | PRINTS | Na+/H+ exchanger signature | 88 | 99 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Csa06g00570 | 553 | PRINTS | Na+/H+ exchanger signature | 102 | 116 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Csa06g00570 | 553 | PRINTS | Na+/H+ exchanger signature | 117 | 125 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Csa06g00570 | 553 | PRINTS | Na+/H+ exchanger signature | 157 | 167 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Csa06g00570 | 553 | Pfam | Sodium/hydrogen exchanger family | 32 | 445 | IPR006153 | GO:0006812|GO:0015299|GO:0016021|GO:0055085 | |
Csa06g00570 | 553 | PANTHER | SODIUM/HYDROGEN EXCHANGER 3 | 18 | 534 | - | - | |
Csa06g00570 | 553 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 18 | 534 | IPR018422 | GO:0006812|GO:0015299|GO:0016021 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02836 | Csa-Chr1:24892478 | Csa06g00570 | Csa-Chr6:4886077 | 0 | dispersed | |
Csa06g00570 | Csa-Chr6:4886077 | Csa07g01780 | Csa-Chr7:18158703 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g00570 | - | - | csv:101215493 | 1051.97 |