Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00570 ATGGCTCCTGAAATGGTGGTCGAATCGAGCTTGTCGATGGTGGATTTTGGGAAGGAGTTGGTGGCGGATCATACTTCGGTAGTTTCTTTGAACTTATTTGTAGCTCTTCTTTGCGGTTGCATTGTTATTGGCCATTTGTTAGAGGAAAATAGATGGATTAACGAGTCCATCACAGCCCTTGTCATTGGATTGTGTACCGGCATCATAATACTGGTAACAACTAGAGGGAAAAGCTCGCATTTATTTTTGTTCAATGAAGAGCTCTTTTTCATTTATCTCCTTCCGCCTATCATTTTTAATGCCGGTTTCCAAGTCAAGAAGAAGCAGTTTTTCCGCAACATCATGACCATAGTGCTTTTTGGTGCTTTTGGCACTCTCATATCGTTCTGTATTATATCATTAGGCGCTTTGCACTTCTTCCAAAAAATGAATATCGGTTCCCTTGATCTTGGAGATTATCTAGCCATTGGAGCAATTTTTTCTGCAACAGACTCTGTTTGCACCTTACAGGTTCTTAATCAGGACGAGACGCCTCTTCTGTATAGCCTGGTTTTTGGGGAAGGTGTTGTAAATGATGCCACATCGGTTGTGCTATTCAATGCAATCCAAAACTTTGATGTTTCTCACATGAATTCAAGCATAGTTCTGCAATTCATTGGGAACTTTTTGTATCTGTTCCTTGCAAGTACTGTACTGGGAATTTTAGTTGGCCTCCTTAGTGCATACATAATTAAGAAGCTCTACTTTGGCAGACACTCTACTGATCGTGAAGTTGCTCTTATGATACTCATGGCGTATTTCTCTTATATGCTAGCTGAACTCTTCTATTTAAGTGCAATTCTCACTGTATTCTTTTGCGGCATTGTTATGTCTCACTATACATGGCATAACGTGACTGAAAGTTCAAGAGTCACTACAAAGCATGCTTTTGCCACCCTTTCATTTGTCGCTGAAATCTTTATCTTTCTTTACGTTGGCATGGATGCTCTAGATATCGAAAAGTGGAGATTTGTTAGCCACAGTCCTGGAAAATCAATTGGGGTGAGCTCAATACTGTTGGGATTGGTTCTGGTTGGAAGAGCAGCATTCGTTTTTCCTTTGTCCTCCTTGTCCAATCTGACCAAGAAGTTCTCGCATGAGAAACTCAACTTGGAGCAACAAGTCACTATTTGGTGGGCTGGTCTCATGCGTGGAGCTGTATCGATGGCACTTGCATATAATCAGTTCACCAGGTCAGGGCACACCCATCTACCAGGCAATGCAATCATGATCACTAGTACCATCACAGTTGTGCTTTCCAGTACAGTGGTATTTGGAATGATGACGAAACCACTAATAGGAATATTGCTACCCCAACCAAAATACACAATGAGCATGCTCTCTTCCGAACCTTCTTCTCCAAAATCCTTCACTATCCCACTCCTCGATAATGACCAAAATACCCCTTCCCCTCTTGACCTCTTTCTCAGAATCCCATCCCATACTGTCCACCATTACTGGCGAAGATTTGACGACGCCTTCATGCGACCCGTCTTCGGAGGACGCGGCTTTGTGCCCTTCGTCCCAGGCTCCCCAACAGAAGACCCAACACAACAATGGCAGACTGAGGGAGCAGAAGCCATTGATGAAAACAAATCCATTCTTATTCAAACTCGAAGATAG 1662 42.78 MAPEMVVESSLSMVDFGKELVADHTSVVSLNLFVALLCGCIVIGHLLEENRWINESITALVIGLCTGIIILVTTRGKSSHLFLFNEELFFIYLLPPIIFNAGFQVKKKQFFRNIMTIVLFGAFGTLISFCIISLGALHFFQKMNIGSLDLGDYLAIGAIFSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQNFDVSHMNSSIVLQFIGNFLYLFLASTVLGILVGLLSAYIIKKLYFGRHSTDREVALMILMAYFSYMLAELFYLSAILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFVAEIFIFLYVGMDALDIEKWRFVSHSPGKSIGVSSILLGLVLVGRAAFVFPLSSLSNLTKKFSHEKLNLEQQVTIWWAGLMRGAVSMALAYNQFTRSGHTHLPGNAIMITSTITVVLSSTVVFGMMTKPLIGILLPQPKYTMSMLSSEPSSPKSFTIPLLDNDQNTPSPLDLFLRIPSHTVHHYWRRFDDAFMRPVFGGRGFVPFVPGSPTEDPTQQWQTEGAEAIDENKSILIQTRR* 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4886077 4894368 - CsaV3_6G005700.1 Csa06g00570 532197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00570 553 Gene3D - 150 201 - -
Csa06g00570 553 PRINTS Na+/H+ exchanger signature 88 99 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa06g00570 553 PRINTS Na+/H+ exchanger signature 102 116 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa06g00570 553 PRINTS Na+/H+ exchanger signature 117 125 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa06g00570 553 PRINTS Na+/H+ exchanger signature 157 167 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa06g00570 553 Pfam Sodium/hydrogen exchanger family 32 445 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Csa06g00570 553 PANTHER SODIUM/HYDROGEN EXCHANGER 3 18 534 - -
Csa06g00570 553 PANTHER SODIUM/HYDROGEN EXCHANGER 18 534 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02836 Csa-Chr1:24892478 Csa06g00570 Csa-Chr6:4886077 0 dispersed
Csa06g00570 Csa-Chr6:4886077 Csa07g01780 Csa-Chr7:18158703 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00570 - - csv:101215493 1051.97