Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g00572 | ATGTCTCTCAAGACCATCTTCCAAGATATGAGGTCCCGCTCCCGCTGCGTCGTCCAGGACGCCTCCGCTCCGCCCCCCACCGATGCCCTCGACCAGAGCTGTTGGGCCAATATGCCTCAGGAACTTCTTAGGGAGGTTTTGATGAGAATCGAGGCCTCCGAGACCTCTTGGCCCTTCAGGAAGAGTGTCGTCGCTTGCGCCGGAGTGTGTCGGAGCTGGCGAGCCATTACTAAGGAGATCGTTAAAACGCCGGAGCTTTCTGGTAGGTTGACGTTCCCGATCTCTATTAAGCAGCCTGGTTCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCAAATCAAACTTATTATCTCTTCCTCAGTTTGACAAGTGCACTAACTGATGATGGTAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCGACCTACACCGATTACATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTATGTTGGGAAATTGAGATCTAACTTTCTAGGAACCAAGTTCACAATCTTCGATGGGCAACCACCACATTCTGGAGCCAAGATCATGAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCCCCCAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCCGAGGAGAATGCAGTGTATCATGGACGCTATTCCCGCTTCATCAGTTGAACTTGGAGGAGTGGCTCCCACGCCAACTGAGCTTTCTTTGAGCAACGTGGAATTGTTCCCGTCCTTCCCCTTTCTAAGGTCAAAATCAAATGCTGATAGCTTACTTTCTGAACCTTTGGGGAGTCAGAAAGATGGAATGTTGGTGCTGAGAAACAAAACACCCAGATGGCACGAGCAGCTTCAGTGCTGGTGTTTGAACTTTCATGGAAGAGTGACAATTGCTTCTGTAAAAAACTTTCAACTAGTTGCTTCTCCCGAAAATGATCCTCCTACAGCAGAAAACGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCGTTACCCAATCTCCGCTTTCCAGGCTTTCACAATCTGCCTCAGCAGTTTCGACACCAAGATTGCTTGTGAATGA | 1161 | 47.46 | MSLKTIFQDMRSRSRCVVQDASAPPPTDALDQSCWANMPQELLREVLMRIEASETSWPFRKSVVACAGVCRSWRAITKEIVKTPELSGRLTFPISIKQPGSRDPLLQCFIKRNRSNQTYYLFLSLTSALTDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKIMKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASSVELGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENDPPTAENEKIILQFGKVGKDLFTMDYRYPISAFQAFTICLSSFDTKIACE* | 387 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4906059 | 4909757 | + | CsaV3_6G005720.1 | Csa06g00572 | 532199 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g00572 | 386 | Pfam | Tub family | 97 | 381 | IPR000007 | - | |
Csa06g00572 | 386 | PANTHER | TUBBY-RELATED | 1 | 386 | - | - | |
Csa06g00572 | 386 | ProSitePatterns | Tub family signature 1. | 316 | 329 | IPR018066 | - | |
Csa06g00572 | 386 | PANTHER | TUBBY-LIKE F-BOX PROTEIN 9 | 1 | 386 | - | - | |
Csa06g00572 | 386 | PRINTS | Tubby superfamily signature | 150 | 166 | IPR000007 | - | |
Csa06g00572 | 386 | PRINTS | Tubby superfamily signature | 166 | 190 | IPR000007 | - | |
Csa06g00572 | 386 | PRINTS | Tubby superfamily signature | 215 | 242 | IPR000007 | - | |
Csa06g00572 | 386 | PRINTS | Tubby superfamily signature | 298 | 315 | IPR000007 | - | |
Csa06g00572 | 386 | PRINTS | Tubby superfamily signature | 316 | 332 | IPR000007 | - | |
Csa06g00572 | 386 | PRINTS | Tubby superfamily signature | 343 | 362 | IPR000007 | - | |
Csa06g00572 | 386 | PRINTS | Tubby superfamily signature | 364 | 386 | IPR000007 | - | |
Csa06g00572 | 386 | SUPERFAMILY | F-box domain | 27 | 78 | IPR036047 | GO:0005515 | |
Csa06g00572 | 386 | Pfam | F-box domain | 35 | 82 | IPR001810 | GO:0005515 | |
Csa06g00572 | 386 | Gene3D | Tubby Protein; Chain A | 93 | 386 | IPR025659 | - | |
Csa06g00572 | 386 | SUPERFAMILY | Tubby C-terminal domain-like | 84 | 386 | IPR025659 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g04225 | Csa-Chr3:36997702 | Csa06g00572 | Csa-Chr6:4906059 | 6.53E-155 | dispersed | |
Csa04g00567 | Csa-Chr4:3753112 | Csa06g00572 | Csa-Chr6:4906059 | 1.74E-156 | dispersed | |
Csa06g00522 | Csa-Chr6:4410794 | Csa06g00572 | Csa-Chr6:4906059 | 3.25E-150 | dispersed | |
Csa06g00572 | Csa-Chr6:4906059 | Csa06g03246 | Csa-Chr6:27387767 | 2.35E-147 | dispersed | |
Csa04g00806 | Csa-Chr4:5646770 | Csa06g00572 | Csa-Chr6:4906059 | 1.17E-133 | transposed | |
Csa03g01411 | Csa-Chr3:10605878 | Csa06g00572 | Csa-Chr6:4906059 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31930 | PF01167 | Tub | 5.90E-109 | CL0395 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g00572 | K19600 | - | csv:101203437 | 780.4 |