Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00572 ATGTCTCTCAAGACCATCTTCCAAGATATGAGGTCCCGCTCCCGCTGCGTCGTCCAGGACGCCTCCGCTCCGCCCCCCACCGATGCCCTCGACCAGAGCTGTTGGGCCAATATGCCTCAGGAACTTCTTAGGGAGGTTTTGATGAGAATCGAGGCCTCCGAGACCTCTTGGCCCTTCAGGAAGAGTGTCGTCGCTTGCGCCGGAGTGTGTCGGAGCTGGCGAGCCATTACTAAGGAGATCGTTAAAACGCCGGAGCTTTCTGGTAGGTTGACGTTCCCGATCTCTATTAAGCAGCCTGGTTCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCAAATCAAACTTATTATCTCTTCCTCAGTTTGACAAGTGCACTAACTGATGATGGTAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCGACCTACACCGATTACATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTATGTTGGGAAATTGAGATCTAACTTTCTAGGAACCAAGTTCACAATCTTCGATGGGCAACCACCACATTCTGGAGCCAAGATCATGAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCCCCCAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCCGAGGAGAATGCAGTGTATCATGGACGCTATTCCCGCTTCATCAGTTGAACTTGGAGGAGTGGCTCCCACGCCAACTGAGCTTTCTTTGAGCAACGTGGAATTGTTCCCGTCCTTCCCCTTTCTAAGGTCAAAATCAAATGCTGATAGCTTACTTTCTGAACCTTTGGGGAGTCAGAAAGATGGAATGTTGGTGCTGAGAAACAAAACACCCAGATGGCACGAGCAGCTTCAGTGCTGGTGTTTGAACTTTCATGGAAGAGTGACAATTGCTTCTGTAAAAAACTTTCAACTAGTTGCTTCTCCCGAAAATGATCCTCCTACAGCAGAAAACGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCGTTACCCAATCTCCGCTTTCCAGGCTTTCACAATCTGCCTCAGCAGTTTCGACACCAAGATTGCTTGTGAATGA 1161 47.46 MSLKTIFQDMRSRSRCVVQDASAPPPTDALDQSCWANMPQELLREVLMRIEASETSWPFRKSVVACAGVCRSWRAITKEIVKTPELSGRLTFPISIKQPGSRDPLLQCFIKRNRSNQTYYLFLSLTSALTDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKIMKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASSVELGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENDPPTAENEKIILQFGKVGKDLFTMDYRYPISAFQAFTICLSSFDTKIACE* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4906059 4909757 + CsaV3_6G005720.1 Csa06g00572 532199

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00572 386 Pfam Tub family 97 381 IPR000007 -
Csa06g00572 386 PANTHER TUBBY-RELATED 1 386 - -
Csa06g00572 386 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Csa06g00572 386 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 386 - -
Csa06g00572 386 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Csa06g00572 386 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Csa06g00572 386 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Csa06g00572 386 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Csa06g00572 386 PRINTS Tubby superfamily signature 316 332 IPR000007 -
Csa06g00572 386 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Csa06g00572 386 PRINTS Tubby superfamily signature 364 386 IPR000007 -
Csa06g00572 386 SUPERFAMILY F-box domain 27 78 IPR036047 GO:0005515
Csa06g00572 386 Pfam F-box domain 35 82 IPR001810 GO:0005515
Csa06g00572 386 Gene3D Tubby Protein; Chain A 93 386 IPR025659 -
Csa06g00572 386 SUPERFAMILY Tubby C-terminal domain-like 84 386 IPR025659 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00572 K19600 TUB, TULP; tubby and related proteins - csv:101203437 780.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04225 Csa-Chr3:36997702 Csa06g00572 Csa-Chr6:4906059 6.53E-155 dispersed
Csa04g00567 Csa-Chr4:3753112 Csa06g00572 Csa-Chr6:4906059 1.74E-156 dispersed
Csa06g00522 Csa-Chr6:4410794 Csa06g00572 Csa-Chr6:4906059 3.25E-150 dispersed
Csa06g00572 Csa-Chr6:4906059 Csa06g03246 Csa-Chr6:27387767 2.35E-147 dispersed
Csa04g00806 Csa-Chr4:5646770 Csa06g00572 Csa-Chr6:4906059 1.17E-133 transposed
Csa03g01411 Csa-Chr3:10605878 Csa06g00572 Csa-Chr6:4906059 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa06g00404 . 1 431 TUB Transcription Factor Family AT1G76900 72.8 1.4e-177 619.4
Csa03g01871 . 1 429 TUB Transcription Factor Family AT1G76900 69.9 1.9e-169 592.4
Csa06g00522 . 1 433 TUB Transcription Factor Family AT1G76900 69.4 4.2e-169 591.3
Csa04g00567 . 1 415 TUB Transcription Factor Family AT1G76900 50.5 7.0e-116 414.5
Csa06g00572 . 13 387 TUB Transcription Factor Family AT1G76900 50.9 7.8e-115 411.0
Csa03g01411 . 63 458 TUB Transcription Factor Family AT1G76900 50.4 5.6e-113 404.8
Csa03g01871 . 174 429 TUB Transcription Factor Family AT1G25280 74.3 5.8e-102 367.5
Csa06g00404 . 173 431 TUB Transcription Factor Family AT1G25280 68.4 3.4e-94 341.7
Csa06g00522 . 175 433 TUB Transcription Factor Family AT1G25280 70.9 7.6e-94 340.5
Csa04g00567 . 177 415 TUB Transcription Factor Family AT1G25280 56.8 4.0e-71 265.0
Csa03g01411 . 224 458 TUB Transcription Factor Family AT1G25280 54.1 6.9e-71 264.2
Csa03g04225 . 180 412 TUB Transcription Factor Family AT1G25280 54.7 3.2e-68 255.4
Csa06g00572 . 154 387 TUB Transcription Factor Family AT1G25280 53.7 4.6e-67 251.5
Csa06g03246 . 176 415 TUB Transcription Factor Family AT1G25280 52.2 1.8e-66 249.6
Csa06g00572 . 98 387 TUB Transcription Factor Family AT5G18680 62.9 3.0e-99 358.6
Csa03g01411 . 168 458 TUB Transcription Factor Family AT5G18680 62.9 2.1e-97 352.4
Csa06g00404 . 112 431 TUB Transcription Factor Family AT5G18680 53.1 5.5e-85 311.2
Csa06g00522 . 112 433 TUB Transcription Factor Family AT5G18680 52.0 2.3e-83 305.8
Csa03g01871 . 113 429 TUB Transcription Factor Family AT5G18680 53.0 8.7e-83 303.9
Csa04g00567 . 115 415 TUB Transcription Factor Family AT5G18680 53.6 2.0e-79 292.7
Csa03g04225 . 116 412 TUB Transcription Factor Family AT5G18680 50.3 4.2e-77 285.0
Csa04g00567 . 1 414 TUB Transcription Factor Family AT2G18280 62.1 2.4e-144 508.8
Csa06g03246 . 1 414 TUB Transcription Factor Family AT2G18280 60.3 6.3e-137 484.2
Csa03g04225 . 1 411 TUB Transcription Factor Family AT2G18280 58.7 9.4e-125 443.7
Csa03g01871 . 1 428 TUB Transcription Factor Family AT2G18280 53.1 2.6e-119 425.6
Csa06g00404 . 1 430 TUB Transcription Factor Family AT2G18280 52.0 2.7e-116 415.6
Csa03g01411 . 71 457 TUB Transcription Factor Family AT2G18280 54.1 4.7e-116 414.8
Csa06g00522 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.1e-112 403.7
Csa06g00572 . 1 386 TUB Transcription Factor Family AT2G18280 53.0 4.1e-112 401.7
Csa04g00806 . 47 380 TUB Transcription Factor Family AT2G18280 51.0 2.0e-95 346.3
Csa03g01411 . 71 458 TUB Transcription Factor Family AT2G47900 68.8 3.8e-161 564.7
Csa06g00572 . 1 387 TUB Transcription Factor Family AT2G47900 68.3 6.0e-159 557.4
Csa06g00404 . 1 431 TUB Transcription Factor Family AT2G47900 55.1 3.1e-131 465.3
Csa03g01871 . 1 429 TUB Transcription Factor Family AT2G47900 56.7 6.9e-131 464.2
Csa06g00522 . 1 433 TUB Transcription Factor Family AT2G47900 56.5 1.2e-130 463.4
Csa04g00567 . 1 415 TUB Transcription Factor Family AT2G47900 56.0 5.3e-123 438.0
Csa03g04225 . 10 412 TUB Transcription Factor Family AT2G47900 55.9 3.0e-118 422.2
Csa06g03246 . 1 415 TUB Transcription Factor Family AT2G47900 51.6 1.5e-112 403.3
Csa04g00806 . 48 381 TUB Transcription Factor Family AT2G47900 51.7 4.8e-100 361.7
Csa07g02085 . 84 300 TUB Transcription Factor Family AT1G16070 63.8 1.7e-75 279.6
Csa06g00404 . 67 431 TUB Transcription Factor Family AT1G43640 70.6 7.3e-148 520.4
Csa03g01871 . 66 429 TUB Transcription Factor Family AT1G43640 68.1 4.7e-147 517.7
Csa06g00522 . 65 433 TUB Transcription Factor Family AT1G43640 65.9 1.0e-141 500.0
Csa03g01411 . 119 458 TUB Transcription Factor Family AT1G43640 53.6 1.5e-105 379.8
Csa06g00572 . 47 387 TUB Transcription Factor Family AT1G43640 51.5 3.4e-105 378.6
Csa03g04225 . 69 412 TUB Transcription Factor Family AT1G43640 50.7 3.3e-100 362.1
Csa04g00567 . 68 415 TUB Transcription Factor Family AT1G43640 50.7 3.1e-98 355.5
Csa03g04225 . 34 412 TUB Transcription Factor Family AT1G47270 63.8 2.2e-134 475.7
Csa04g00567 . 34 415 TUB Transcription Factor Family AT1G47270 58.4 3.0e-123 438.7
Csa06g03246 . 33 415 TUB Transcription Factor Family AT1G47270 56.8 3.1e-120 428.7
Csa03g01871 . 1 429 TUB Transcription Factor Family AT1G47270 52.2 1.1e-114 410.2
Csa06g00522 . 48 433 TUB Transcription Factor Family AT1G47270 54.6 2.4e-112 402.5
Csa06g00404 . 30 431 TUB Transcription Factor Family AT1G47270 51.6 6.9e-112 401.0
Csa06g00572 . 1 387 TUB Transcription Factor Family AT1G47270 50.6 4.6e-108 388.3
Csa03g01411 . 71 458 TUB Transcription Factor Family AT1G47270 50.4 1.4e-104 376.7
Csa04g00806 . 1 381 TUB Transcription Factor Family AT1G53320 72.7 1.2e-156 549.7
Csa04g00567 . 20 415 TUB Transcription Factor Family AT1G53320 51.5 1.5e-103 373.2
Csa06g00572 . 22 387 TUB Transcription Factor Family AT1G53320 50.5 3.3e-103 372.1
Csa03g01411 . 168 458 TUB Transcription Factor Family AT3G06380 64.7 2.7e-97 352.1
Csa06g00572 . 98 387 TUB Transcription Factor Family AT3G06380 62.2 1.3e-94 343.2
Csa03g01871 . 117 429 TUB Transcription Factor Family AT3G06380 54.0 4.2e-82 301.6
Csa06g00522 . 116 433 TUB Transcription Factor Family AT3G06380 52.8 1.8e-80 296.2
Csa04g00567 . 119 415 TUB Transcription Factor Family AT3G06380 53.9 5.1e-80 294.7
Csa06g00404 . 116 431 TUB Transcription Factor Family AT3G06380 51.1 1.1e-79 293.5
Csa03g04225 . 120 412 TUB Transcription Factor Family AT3G06380 52.2 8.2e-78 287.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002294 1 2 1 1 2 2 3 2 2 2 2 2 4 1 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31930 PF01167 Tub 5.90E-109 CL0395 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g00572 Csa_Chr06 FPKM 280.103882 277.495026 217.318436 215.303619 329.802277 384.523285 321.298523 255.801361 287.752228 248.983215