Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00572 ATGTCTCTCAAGACCATCTTCCAAGATATGAGGTCCCGCTCCCGCTGCGTCGTCCAGGACGCCTCCGCTCCGCCCCCCACCGATGCCCTCGACCAGAGCTGTTGGGCCAATATGCCTCAGGAACTTCTTAGGGAGGTTTTGATGAGAATCGAGGCCTCCGAGACCTCTTGGCCCTTCAGGAAGAGTGTCGTCGCTTGCGCCGGAGTGTGTCGGAGCTGGCGAGCCATTACTAAGGAGATCGTTAAAACGCCGGAGCTTTCTGGTAGGTTGACGTTCCCGATCTCTATTAAGCAGCCTGGTTCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCAAATCAAACTTATTATCTCTTCCTCAGTTTGACAAGTGCACTAACTGATGATGGTAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCGACCTACACCGATTACATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTATGTTGGGAAATTGAGATCTAACTTTCTAGGAACCAAGTTCACAATCTTCGATGGGCAACCACCACATTCTGGAGCCAAGATCATGAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCCCCCAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCCGAGGAGAATGCAGTGTATCATGGACGCTATTCCCGCTTCATCAGTTGAACTTGGAGGAGTGGCTCCCACGCCAACTGAGCTTTCTTTGAGCAACGTGGAATTGTTCCCGTCCTTCCCCTTTCTAAGGTCAAAATCAAATGCTGATAGCTTACTTTCTGAACCTTTGGGGAGTCAGAAAGATGGAATGTTGGTGCTGAGAAACAAAACACCCAGATGGCACGAGCAGCTTCAGTGCTGGTGTTTGAACTTTCATGGAAGAGTGACAATTGCTTCTGTAAAAAACTTTCAACTAGTTGCTTCTCCCGAAAATGATCCTCCTACAGCAGAAAACGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCGTTACCCAATCTCCGCTTTCCAGGCTTTCACAATCTGCCTCAGCAGTTTCGACACCAAGATTGCTTGTGAATGA 1161 47.46 MSLKTIFQDMRSRSRCVVQDASAPPPTDALDQSCWANMPQELLREVLMRIEASETSWPFRKSVVACAGVCRSWRAITKEIVKTPELSGRLTFPISIKQPGSRDPLLQCFIKRNRSNQTYYLFLSLTSALTDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKIMKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASSVELGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENDPPTAENEKIILQFGKVGKDLFTMDYRYPISAFQAFTICLSSFDTKIACE* 387
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 4906059 4909757 + CsaV3_6G005720.1 Csa06g00572 532199
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00572 386 Pfam Tub family 97 381 IPR000007 -
Csa06g00572 386 PANTHER TUBBY-RELATED 1 386 - -
Csa06g00572 386 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Csa06g00572 386 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 1 386 - -
Csa06g00572 386 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Csa06g00572 386 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Csa06g00572 386 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Csa06g00572 386 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Csa06g00572 386 PRINTS Tubby superfamily signature 316 332 IPR000007 -
Csa06g00572 386 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Csa06g00572 386 PRINTS Tubby superfamily signature 364 386 IPR000007 -
Csa06g00572 386 SUPERFAMILY F-box domain 27 78 IPR036047 GO:0005515
Csa06g00572 386 Pfam F-box domain 35 82 IPR001810 GO:0005515
Csa06g00572 386 Gene3D Tubby Protein; Chain A 93 386 IPR025659 -
Csa06g00572 386 SUPERFAMILY Tubby C-terminal domain-like 84 386 IPR025659 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04225 Csa-Chr3:36997702 Csa06g00572 Csa-Chr6:4906059 6.53E-155 dispersed
Csa04g00567 Csa-Chr4:3753112 Csa06g00572 Csa-Chr6:4906059 1.74E-156 dispersed
Csa06g00522 Csa-Chr6:4410794 Csa06g00572 Csa-Chr6:4906059 3.25E-150 dispersed
Csa06g00572 Csa-Chr6:4906059 Csa06g03246 Csa-Chr6:27387767 2.35E-147 dispersed
Csa04g00806 Csa-Chr4:5646770 Csa06g00572 Csa-Chr6:4906059 1.17E-133 transposed
Csa03g01411 Csa-Chr3:10605878 Csa06g00572 Csa-Chr6:4906059 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31930 PF01167 Tub 5.90E-109 CL0395 Csa TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00572 K19600 - csv:101203437 780.4