Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00579 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGTGGCGGAGGAGGCGGTGGTGGTGCTCGAATCTTAGCCGATTTACCTTACACAAATAACTCCACCACTAACGCCAACAATAACCCCACCGGCGGCATCGGCGGCGGAGGAAATATGTCCTCCAGCGCAATCGCTCCGCCGCGCCTCATCACTCAATCCCTCACTAAGTCGATGTTCAACTCCCCCGGACTCTCTCTCGCTCTTACGAACATGGACGGCGGGCCAGGAGATTTAGCTGCCCGACTGCCCGAGGGTTTCGAGCATAATGTTGGAAGGAGAGGCAGAGAGGAAGAACACGAGAGTAGATCTGGGAGTGACAACATGGACGGCGGCTCCGGTGATGACCAGGACGCCGCCGACAACCCTCCCAGGAAAAAGCGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAAGCTGTCTTTAAAGAGTGCCCTCATCCTGATGAGAAGCAACGGCTTGAGTTGAGTCGGAGGCTGTGTTTAGAAACTAGGCAAGTTAAATTTTGGTTCCAAAATCGGAGGACCCAGATGAAGACCCAATTGGAACGCCACGAGAATACTTTGCTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCAATTCGAGATGCTATGAGGAATCCAATCTGTTCAAACTGTGGTGGTCCGGCGATCATTGGCGAAATCTCGCTGGAAGAACAGCAGTTGAGGATTGAAAATGCTCGGTTGAAAGATGAATTGGACCGGGTTTGCGCACTGGCTGGGAAGTTTCTTGGCAGGCCGATTTCATCGCTGGCTAACTCTATTGCACCTCCATTGCCGAGCTCAAGTCTGGAACTGGGAGTTGGGAGTAATGGGTTCGGTAGTTTGACCATGGCGACGTCAATGCCCATCGGGCCTGATTTTGGAGGTGGGTTGTCGGGTAATCTTGCTGTTGTTCAGGCACCTGCAAGGCCAACACCGGGGATGGGACTTGATCGTTCAGTTGAGCGATCTATGCTACTGGAGCTTGCTTTGGCTGCCATGGATGAATTGGTCAAAATGGCGCAGACTGACGAGCCACTTTGGATTGGGAGTTTGGAAGGTGGAAGAGAAATACTGAACCAGGAGGAGTACATGAGGACATTTACTCCTTGCATTGGCATGAAACCAAACGGTTTTGTCACCGAGGCGTCAAGAGAAAGTGGCATGGTGATCATCAACAGCTTGGCTCTCGTGGAAACATTGATGGACTCGAATCGATGGGCTGAGATGTTTCCGTGTATGATTGCTCGAACCACGACAACTGATGTGATCTCCACTGGCATGGGGGGAACGAGGAACGGTGCACTTCAACTGATGCACGCAGAGCTTCAAGTGCTCTCGCCGTTGGTGCCCGTCCGGGAAGTCAATTTTCTGAGGTTCTGCAAGCAGCATGCTGAAGGGGTGTGGGCAGTCGTCGACGTGTCAGTTGATGCCATGAGAGAGACTCCAACCGGTGGTGGTTCATCATTCGGCAACTGCAGAAGGCTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAACGGGTATTCCAAGGTTACGTGGGTGGAACATGCAGAGTACGATGATAGCCAAGTGCACCAGCTCTATCGTCCCCTACTCAGCTCCGGTATGGGCTTTGGAGCACAACGGTGGGTCACCACCCTTCAACGGCAATGTGAATGCCTTGCGATTCTCATGTCATCTGCTGTACCAATCCGAGATCACACTGCCATAACCGCAGGCGGGCGGAGGAGCATGCTGAAGCTAGCCCAACGAATGACAGCCAACTTCTGTGCCGGTGTGTGTGCATCCACAGTGCACAAATGGAACAAGCTGAATGCTGGGAGCGTAGATGAGGATGTCCGTGTCATGACACGGAAGAGTGTGGATGATCCTGGAGAGCCTCCAGGCATTGTGTTGAGCGCTGCTACATCCGTTTGGCTCCCGGTATCGCCCCAACGACTCTTTGATTTCCTTCGTGACGAGCGGCTGAGGAGTGAATGGGACATCCTATCCAACGGCGGCCCCATGCAGGAGATGGCCCATATTGCCAAGGGCCAAGATCATGGCAACTGCGTCTCTCTATTAAGAGCCAGCGCTATGAATGCGAACCAGAGCAGTATGTTGATTTTACAAGAGACGTGCATAGACGCGGCGGGGTCGCTTGTGGTTTACGCACCGGTGGACATCCCGGCAATGCACGTCGTGATGAACGGTGGGGATTCGGCTTACGTGGCGCTTCTGCCGTCAGGGTTTGCGATCGTCCCAGACGGGGCGGTGACAGGAGGTCTGACAGCGACAAATGGGAGCAGTCCAAGTGGCGGGGAGGGCCCACAGAGTCAGAGAGCGGCAGGCGGCGGGTCCCTCCTCACAGTTGCATTTCAAATCCTCGTGAATAGCCTCCCTACGGCTAAGCTCACCGTAGAATCGGTTGAAACGGTCAACAATCTCATCTCTTGCACCGTCCAGAAGATCAAGGCCGCTCTTCAATGCGAAACCTGA 2526 53.72 MSFGGFLDGGGGGGGGGGARILADLPYTNNSTTNANNNPTGGIGGGGNMSSSAIAPPRLITQSLTKSMFNSPGLSLALTNMDGGPGDLAARLPEGFEHNVGRRGREEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCALAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLAVVQAPARPTPGMGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYMRTFTPCIGMKPNGFVTEASRESGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTDVISTGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDAMRETPTGGGSSFGNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGMGFGAQRWVTTLQRQCECLAILMSSAVPIRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVTGGLTATNGSSPSGGEGPQSQRAAGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET* 842
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4976972 4982494 - CsaV3_6G005790.1 Csa06g00579 532206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00579 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 80 839 - -
Csa06g00579 841 ProSiteProfiles START domain profile. 334 572 IPR002913 GO:0008289
Csa06g00579 841 SUPERFAMILY Homeodomain-like 117 192 IPR009057 -
Csa06g00579 841 MobiDBLite consensus disorder prediction 773 792 - -
Csa06g00579 841 CDD START_ArGLABRA2_like 338 568 - -
Csa06g00579 841 Pfam Homeodomain 135 190 IPR001356 GO:0003677
Csa06g00579 841 SUPERFAMILY Bet v1-like 336 569 - -
Csa06g00579 841 MobiDBLite consensus disorder prediction 96 115 - -
Csa06g00579 841 Coils Coil 186 218 - -
Csa06g00579 841 CDD homeodomain 134 192 IPR001356 GO:0003677
Csa06g00579 841 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 80 839 IPR042160 -
Csa06g00579 841 SMART START_1 343 569 IPR002913 GO:0008289
Csa06g00579 841 Gene3D - 122 208 - -
Csa06g00579 841 MobiDBLite consensus disorder prediction 85 142 - -
Csa06g00579 841 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Csa06g00579 841 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Csa06g00579 841 SUPERFAMILY Bet v1-like 597 834 - -
Csa06g00579 841 Coils Coil 233 253 - -
Csa06g00579 841 Pfam START domain 343 569 IPR002913 GO:0008289
Csa06g00579 841 SMART HOX_1 133 196 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02688 Csa-Chr2:23428044 Csa06g00579 Csa-Chr6:4976972 0 dispersed
Csa03g02389 Csa-Chr3:21927557 Csa06g00579 Csa-Chr6:4976972 0 dispersed
Csa06g00579 Csa-Chr6:4976972 Csa07g00370 Csa-Chr7:2759169 0 dispersed
Csa07g02252 Csa-Chr7:21047615 Csa06g00579 Csa-Chr6:4976972 2.12E-106 dispersed
Csa01g00502 Csa-Chr1:3341774 Csa06g00579 Csa-Chr6:4976972 1.17E-166 transposed
Csa03g01781 Csa-Chr3:13390651 Csa06g00579 Csa-Chr6:4976972 4.11E-153 transposed
Csa03g04584 Csa-Chr3:39911797 Csa06g00579 Csa-Chr6:4976972 0 transposed
Csa03g01692 Csa-Chr3:12676781 Csa06g00579 Csa-Chr6:4976972 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31931 PF01852 START 5.00E-58 CL0209 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00579 K09338 - csv:101222248 1574.3