Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa06g00596 | ATGGCCGATAATCAGAAGCAAGAACTCGACGACGATGACGACTCTCCACCCACCCATCTCCGTATCAACGACTCCGATTCCTCTCGAATGGACCTTCTTCCTCTTACTCCCAAGCAGGAACATCCTGACTCCAACCTCCCTCATGATCTTCTCACTTTCAACCCGGATATCCCTAAAACCCTCTCCTCTCTTCCTCCCAAGAGACCTTCCACCAAGGATCGCCACACCAAGGTCGAGGGCAGAGGTCGGAGAATCCGAATTCCTGCCACCTGTGCCGCCCGTATCTTCCAGTTGACTCGTGAGCTCGGCCACAAGTCCGACGGCGAAACTATCCGCTGGCTTCTCGAGCGGGCCGAGCCCGCCATCATCGCTGCTACCGGTACTGGTACCATTCCCGCCATTGCCATGTCTGTTAACGGCACTCTCAAAATTCCCACCACCACATCCTCCTCTAACCAAGATTCCGCCGACCCTTCCGCCGTTAAGAAACGTCGTAAGCGCCCCGCTAACAGTGACTACGTTGACGTAAATGACGCCCTCTCCGTCTCCATCTCCGCTTCCAACGTCGCCGGTTCCTCCGCCGTCCAACAGGCTTTTCCACCGGGGTTCGTTCCAGTGTGGGCCATCCCTTCGAACGCCATAATTCCCGGGGCTGTTTTCATGGTTCCATCCGTAGCATGCTCTTCCACCCGTCCACAGTTGTTCTCATTCTCGACTCCGGCGGCACCGCTTATCAACACGACGGCGCGGCCAATTTCCGCCTTCCCGTCGAAGGCAGAGACATCTCACATTCAATCGAGCCCCACCAATCAAAGCTCGAGCACATCAAGCTCCTCCGCTTCCAAATCTCAATCCGTCATGGCACCGATATCGAGCTCGAGCGGAAAAACGACGACGCAGATGCTTAGAGATTTCTCGTTGGAGATATACGACAAGGAAGAGCTTCAATTCATGTCAAGCTCGTCGTCAAAACATTGA | 978 | 55.01 | MADNQKQELDDDDDSPPTHLRINDSDSSRMDLLPLTPKQEHPDSNLPHDLLTFNPDIPKTLSSLPPKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSADPSAVKKRRKRPANSDYVDVNDALSVSISASNVAGSSAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFSTPAAPLINTTARPISAFPSKAETSHIQSSPTNQSSSTSSSSASKSQSVMAPISSSSGKTTTQMLRDFSLEIYDKEELQFMSSSSSKH* | 326 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 5060846 | 5061823 | + | CsaV3_6G005960.1 | Csa06g00596 | 532223 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa06g00596 | 325 | MobiDBLite | consensus disorder prediction | 257 | 299 | - | - | |
| Csa06g00596 | 325 | ProSiteProfiles | TCP domain profile. | 71 | 125 | IPR017887 | - | |
| Csa06g00596 | 325 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Csa06g00596 | 325 | Pfam | TCP family transcription factor | 70 | 162 | IPR017887 | - | |
| Csa06g00596 | 325 | MobiDBLite | consensus disorder prediction | 144 | 170 | - | - | |
| Csa06g00596 | 325 | PANTHER | TRANSCRIPTION FACTOR TCP9 | 21 | 323 | - | - | |
| Csa06g00596 | 325 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 21 | 323 | IPR005333 | GO:0003700 | |
| Csa06g00596 | 325 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa03g02480 | Csa-Chr3:23172125 | Csa06g00596 | Csa-Chr6:5060846 | 4.75E-37 | dispersed | |
| Csa05g02171 | Csa-Chr5:24700297 | Csa06g00596 | Csa-Chr6:5060846 | 3.15E-36 | dispersed | |
| Csa05g02440 | Csa-Chr5:26363833 | Csa06g00596 | Csa-Chr6:5060846 | 6.63E-38 | dispersed | |
| Csa06g00596 | Csa-Chr6:5060846 | Csa06g00805 | Csa-Chr6:6456718 | 9.44E-36 | dispersed | |
| Csa03g01668 | Csa-Chr3:12498549 | Csa06g00596 | Csa-Chr6:5060846 | 4.47E-65 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 31933 | PF03634 | TCP | 7.00E-30 | No_clan | Csa | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa06g00596 | - | - | csv:101218711 | 589.726 |