Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00596 ATGGCCGATAATCAGAAGCAAGAACTCGACGACGATGACGACTCTCCACCCACCCATCTCCGTATCAACGACTCCGATTCCTCTCGAATGGACCTTCTTCCTCTTACTCCCAAGCAGGAACATCCTGACTCCAACCTCCCTCATGATCTTCTCACTTTCAACCCGGATATCCCTAAAACCCTCTCCTCTCTTCCTCCCAAGAGACCTTCCACCAAGGATCGCCACACCAAGGTCGAGGGCAGAGGTCGGAGAATCCGAATTCCTGCCACCTGTGCCGCCCGTATCTTCCAGTTGACTCGTGAGCTCGGCCACAAGTCCGACGGCGAAACTATCCGCTGGCTTCTCGAGCGGGCCGAGCCCGCCATCATCGCTGCTACCGGTACTGGTACCATTCCCGCCATTGCCATGTCTGTTAACGGCACTCTCAAAATTCCCACCACCACATCCTCCTCTAACCAAGATTCCGCCGACCCTTCCGCCGTTAAGAAACGTCGTAAGCGCCCCGCTAACAGTGACTACGTTGACGTAAATGACGCCCTCTCCGTCTCCATCTCCGCTTCCAACGTCGCCGGTTCCTCCGCCGTCCAACAGGCTTTTCCACCGGGGTTCGTTCCAGTGTGGGCCATCCCTTCGAACGCCATAATTCCCGGGGCTGTTTTCATGGTTCCATCCGTAGCATGCTCTTCCACCCGTCCACAGTTGTTCTCATTCTCGACTCCGGCGGCACCGCTTATCAACACGACGGCGCGGCCAATTTCCGCCTTCCCGTCGAAGGCAGAGACATCTCACATTCAATCGAGCCCCACCAATCAAAGCTCGAGCACATCAAGCTCCTCCGCTTCCAAATCTCAATCCGTCATGGCACCGATATCGAGCTCGAGCGGAAAAACGACGACGCAGATGCTTAGAGATTTCTCGTTGGAGATATACGACAAGGAAGAGCTTCAATTCATGTCAAGCTCGTCGTCAAAACATTGA 978 55.01 MADNQKQELDDDDDSPPTHLRINDSDSSRMDLLPLTPKQEHPDSNLPHDLLTFNPDIPKTLSSLPPKRPSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSSNQDSADPSAVKKRRKRPANSDYVDVNDALSVSISASNVAGSSAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFSTPAAPLINTTARPISAFPSKAETSHIQSSPTNQSSSTSSSSASKSQSVMAPISSSSGKTTTQMLRDFSLEIYDKEELQFMSSSSSKH* 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5060846 5061823 + CsaV3_6G005960.1 Csa06g00596 532223

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00596 325 MobiDBLite consensus disorder prediction 257 299 - -
Csa06g00596 325 ProSiteProfiles TCP domain profile. 71 125 IPR017887 -
Csa06g00596 325 MobiDBLite consensus disorder prediction 1 26 - -
Csa06g00596 325 Pfam TCP family transcription factor 70 162 IPR017887 -
Csa06g00596 325 MobiDBLite consensus disorder prediction 144 170 - -
Csa06g00596 325 PANTHER TRANSCRIPTION FACTOR TCP9 21 323 - -
Csa06g00596 325 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 21 323 IPR005333 GO:0003700
Csa06g00596 325 MobiDBLite consensus disorder prediction 1 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00596 - - - csv:101218711 589.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02480 Csa-Chr3:23172125 Csa06g00596 Csa-Chr6:5060846 4.75E-37 dispersed
Csa05g02171 Csa-Chr5:24700297 Csa06g00596 Csa-Chr6:5060846 3.15E-36 dispersed
Csa05g02440 Csa-Chr5:26363833 Csa06g00596 Csa-Chr6:5060846 6.63E-38 dispersed
Csa06g00596 Csa-Chr6:5060846 Csa06g00805 Csa-Chr6:6456718 9.44E-36 dispersed
Csa03g01668 Csa-Chr3:12498549 Csa06g00596 Csa-Chr6:5060846 4.47E-65 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g01450 . 44 265 TCP Transcription Factor Family AT5G23280 62.0 5.9e-64 241.1
Csa05g00601 . 34 257 TCP Transcription Factor Family AT5G23280 59.1 8.8e-60 227.3
Csa06g00596 . 65 324 TCP Transcription Factor Family AT2G45680 54.1 6.8e-66 248.1
Csa05g02440 . 70 164 TCP Transcription Factor Family AT3G47620 89.7 8.0e-41 165.2
Csa01g00533 CCT,ECH 37 137 TCP Transcription Factor Family AT3G47620 82.2 1.2e-39 161.4
Csa05g02171 . 47 148 TCP Transcription Factor Family AT1G69690 78.8 2.7e-37 152.9
Csa03g02480 . 42 295 TCP Transcription Factor Family AT3G27010 54.6 1.2e-58 223.8
Csa06g00805 . 36 268 TCP Transcription Factor Family AT3G27010 51.6 1.1e-51 200.7
Csa05g00601 . 4 254 TCP Transcription Factor Family AT5G08330 54.8 2.8e-63 238.8
Csa05g01450 . 30 263 TCP Transcription Factor Family AT5G08330 59.3 9.0e-62 233.8
Csa04g01035 . 38 172 TCP Transcription Factor Family AT3G02150 57.4 1.1e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011535 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31933 PF03634 TCP 7.00E-30 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g00596 Csa_Chr06 FPKM 0.784941 0.670698 0.413103 0.724373 6.157217 5.852104 7.642148 0.538569 0.735231 0.51189