Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00598 ATGGATAATTACGGTTCTTCATCTCCATATCCATATCACAATCCTTACTCATACCCTCGTCCAGTTCCTCCCCAATACCCACCTCCTTCTCAATATCCACCGCCTTCTCAGTATCCTCCTCCTCATTACACACATCCAAATTCAGATCCATATGCTCCTCTTTCTTACCCTTACCCCTATAATAATCCTTCACATCCCTCACCATTTGCATATCCCCCACCCCCATCTCATTCTGGACCTGTTGAGTATTTTTCACACCCACCCCCACATTCTTCCCCTCTACCTTACCCATATTCTTACTCCGATGCCTCATCCACTAATGCTGCTGCTAGGCCCTCTATTCAATATCATAACAGTTTCCTACCTGGTTCATCCCCATATCGGTATCAAGAATCTAGTGCCTACCCTCCACCTGAAACTCAATACCCACCACCCCCTTCAAGAGTCAATAGCTTCTCTGGCCACTATAGGAATGATAGCACAGACTCCGTCTCGTCTGTTGCTTCTGCATACCCACCTCTGGATGACCTTTTGAGCAATGTACATTTATCTGATCATCAATCAACTGCTCCTGCATCACCTCCTGCACCTGCTGCAGCACCTTCACCTGCACAGCCTTCAGCTTCGTTATTGGCTAATTCACCTCAAAGTGCTAGATATGATCGCCGTGACCGATTTTATGGCTTTCCGAATTCATCCTTTTCTAGTTTCGACACAGGGCATTCAGATCAAATGATTTCATCCAAACAACCTTTGTTTTCCCATTCAAGCTCATTCAGTGGGTCTCAACAGAACTTGCAGATTGTTCCACTGCATGGTAAAGCATCTTTGAAAGTTTTGCTGTTGCATGGAAACTTAGAAATTTGGGTTAATGAGGCCAAAAATCTTCCAAATATGGACATGTTTCACAAAACCTTGGGGGATATGTTTGCAAAATTGCCTGGGAACATGAGCAACAAAATTGAAGGACACGTGAGCCATAAGATCACTAGTGATCCTTATGTATCGATCAATATAACAAATGCAGTAATTGGGAGGACTTTTGTTATAAGCAACAATGAAAATCCTGTATGGAGGCAACATTTCTATGTTCCTGTTGCACATTATGCTGCTGAAGTAGTTTTTGTCGTTAAAGACAGTGATGTTGTTGGTTCACAGCTAATAGGAACTGTGGCAGTTCCTGCTGAACAAATATATTCAGGGTCTATGGTTGAGGGAACCTTCCCAATCCTACTTGGTGGGAAGCCATGTAAGCCTGGAGCTGCTCTAAGTATTTCTATTCAATATACCCCAATGGAGAGGCTTAGCACTTATCACCATGGAGTGGGAGCTGGCCCTGATTATCAGGGGGTTCCTGATACGTATTTTCCCCTCAGAAAGGGTGGAGCCGTCACTCTTTATCAAGATGCCCATGTTCCAGACGGACACCTTCCAAATTTGATGCTTGATAATGGTACGTACTATGTGAATGGGAAGTGCTGGCATGACATTTTTGATGCTGTACGACAGGCTCGCAGGTTAGTTTACATAACTGGGTGGTCAGTGTGGCACAAAGTGAAATTAGTTCGGGATACTGGCTATGGAACAGAGTGTACTCTTGGAGATCTTCTGAGGTCAAAGTCTCAAGAGGGAGTGAGAGTTTTGCTTCTTGTTTGGGACGATCCCACTTCTAGGAGCATTTTGGGTTATAAAACTGATGGTTTCATGCAAACCCATGATGAGGAAACTCGCCGTTTTTTCAAACACTCCTCTGTACAAGTGATACTTTGTCCTCGGATTGCTGGAAAACGACATAGCTGGGTTAAGCAAAAGGAAGTTGGAACTATATATACACATCATCAGAAAACAGTTATTGTGGATGCTGATGCTGGAAATAATAGAAGAAAGATTATAGCTTTTGTTGGAGGGCTTGATTTATGTGACGGGCGGTATGATACTCCATCACATCCCATATTTCGGACCCTTCAAACAATACACAAGGACGATTACCACAATCCTACATACACGGGTAGTGTTGTTGGTTGTCCAAGAGAACCATGGCACGATCTACACAGCAAAATCGAGGGTCCAGCAGCATATGATGTTCTGACTAACTTTGAGGAGCGATGGAGGAGGGCTTCAAAACCTCACGGGATAAAGAAGTTGAAATCATATGATGATGCTTTGCTGAGTATTGAAAGAATTCATGACATAGTTGGAATTTCTGAAGCGTACTGCACTAATGAAAATGACCCTGAATCATGGCATGTGCAGATTTTTCGGTCAATTGATTCAACTTCTGTTAAAGATTTCCCAAAGGAGCCAAAAGATGCCCCAAGCAAGAACCTCGTATGTGGAAAGAATGTGTTGATTGACATGAGTATACACACAGCCTACGTGAAAGCCATTCGAGCTGCGCAACATTACATTTATATAGAGAACCAGTATTTCATCGGGTCATCCTTCAATTGGAATTCAAATAAAGATATAGGTGCCAACAATTTGATTCCAATGGAAATTGCCCTTAAGATTGCTGATAAAATCAGAGCAAATGAAAGGTTTGCTGCATATATTGTCATCCCCATGTGGCCTGAGGGTGTTCCAACCGCTGCTGCTACTCAGAGAATACTATTTTGGCAGCAAAAAACCATGCAAATGATGTATGAGGTGATTTACAAGGCTTTGATGGAGGTTGGTCTTGAGGATGCATTCTCTCCACAAGACTATTTGAACTTCTTCTGCCTGGGAAATCGTGAGACTATGGATGGAAATGATCCTTTATGTTCTGGAAGTCCTAATGGAGAAAGTACTCCTCAGGCACTTAGTCGGAAAAGCAGAAGGTTTATGATATATGTTCACTCCAAAGGCATGATAGTTGACGACGAGTATGTGATTTTGGGATCTGCCAACATCAACCAGAGATCCATGGAAGGAACTAGAGATACTGAGATTGCTATGGGAGCCTATCAACCCCATTATACGTGGGCAAGGAAACTTTCACATCCTCGTGGACAGATCTATGGATATAGGATGTCGTTGTGGGCGGAGCATATGGGAACTACCGAGGAGTGTTTCAACCACCCGGAGAGCCTAGAATGCGTGAAAAGAGTTAGAACAATGGGAGAACTAAACTGGAAACAGTTTGCTGCAGATGATGTAACAGAGATGAGAGGACACCTTCTGAAATACCCAGTTGAAGTTGATAGAAGAGGGAGAGTAAGATCTCTTCCAGGTCATGAAAATTTTCCAGATGTTGGAGGAAAAATTGTTGGTTCATTTCTTGGCATCCAGGAGAACCTCACTATCTAA 3288 43.04 MDNYGSSSPYPYHNPYSYPRPVPPQYPPPSQYPPPSQYPPPHYTHPNSDPYAPLSYPYPYNNPSHPSPFAYPPPPSHSGPVEYFSHPPPHSSPLPYPYSYSDASSTNAAARPSIQYHNSFLPGSSPYRYQESSAYPPPETQYPPPPSRVNSFSGHYRNDSTDSVSSVASAYPPLDDLLSNVHLSDHQSTAPASPPAPAAAPSPAQPSASLLANSPQSARYDRRDRFYGFPNSSFSSFDTGHSDQMISSKQPLFSHSSSFSGSQQNLQIVPLHGKASLKVLLLHGNLEIWVNEAKNLPNMDMFHKTLGDMFAKLPGNMSNKIEGHVSHKITSDPYVSINITNAVIGRTFVISNNENPVWRQHFYVPVAHYAAEVVFVVKDSDVVGSQLIGTVAVPAEQIYSGSMVEGTFPILLGGKPCKPGAALSISIQYTPMERLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPDGHLPNLMLDNGTYYVNGKCWHDIFDAVRQARRLVYITGWSVWHKVKLVRDTGYGTECTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKHSSVQVILCPRIAGKRHSWVKQKEVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDTPSHPIFRTLQTIHKDDYHNPTYTGSVVGCPREPWHDLHSKIEGPAAYDVLTNFEERWRRASKPHGIKKLKSYDDALLSIERIHDIVGISEAYCTNENDPESWHVQIFRSIDSTSVKDFPKEPKDAPSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNSNKDIGANNLIPMEIALKIADKIRANERFAAYIVIPMWPEGVPTAAATQRILFWQQKTMQMMYEVIYKALMEVGLEDAFSPQDYLNFFCLGNRETMDGNDPLCSGSPNGESTPQALSRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHYTWARKLSHPRGQIYGYRMSLWAEHMGTTEECFNHPESLECVKRVRTMGELNWKQFAADDVTEMRGHLLKYPVEVDRRGRVRSLPGHENFPDVGGKIVGSFLGIQENLTI* 1096
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5064048 5072899 - CsaV3_6G005980.1 Csa06g00598 532225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00598 1095 SUPERFAMILY Phospholipase D/nuclease 449 707 - -
Csa06g00598 1095 Pfam Phospholipase D Active site motif 942 968 IPR001736 GO:0003824
Csa06g00598 1095 Pfam Phospholipase D Active site motif 609 643 IPR001736 GO:0003824
Csa06g00598 1095 MobiDBLite consensus disorder prediction 146 168 - -
Csa06g00598 1095 SUPERFAMILY Phospholipase D/nuclease 734 1027 - -
Csa06g00598 1095 MobiDBLite consensus disorder prediction 97 136 - -
Csa06g00598 1095 MobiDBLite consensus disorder prediction 14 95 - -
Csa06g00598 1095 SMART C2_3c 285 407 IPR000008 -
Csa06g00598 1095 PANTHER PHOSPHOLIPASE D 187 1095 IPR015679 -
Csa06g00598 1095 Pfam Phospholipase D C terminal 1015 1085 IPR024632 -
Csa06g00598 1095 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 608 643 IPR001736 GO:0003824
Csa06g00598 1095 SMART pld_4 608 643 IPR001736 GO:0003824
Csa06g00598 1095 SMART pld_4 941 968 IPR001736 GO:0003824
Csa06g00598 1095 PANTHER PHOSPHOLIPASE D ALPHA 1 187 1095 - -
Csa06g00598 1095 Pfam C2 domain 284 410 IPR000008 -
Csa06g00598 1095 Gene3D Endonuclease Chain A 754 991 - -
Csa06g00598 1095 MobiDBLite consensus disorder prediction 1 169 - -
Csa06g00598 1095 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 282 431 IPR035892 -
Csa06g00598 1095 ProSiteProfiles C2 domain profile. 262 408 IPR000008 -
Csa06g00598 1095 MobiDBLite consensus disorder prediction 184 215 - -
Csa06g00598 1095 Gene3D Endonuclease Chain A 484 722 - -
Csa06g00598 1095 CDD C2_plant_PLD 278 430 - -
Csa06g00598 1095 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 941 968 IPR001736 GO:0003824
Csa06g00598 1095 Gene3D C2 domain 279 422 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02386 Csa-Chr2:21161532 Csa06g00598 Csa-Chr6:5064048 0 dispersed
Csa03g00348 Csa-Chr3:2867950 Csa06g00598 Csa-Chr6:5064048 0 dispersed
Csa04g00153 Csa-Chr4:863917 Csa06g00598 Csa-Chr6:5064048 0 dispersed
Csa06g00598 Csa-Chr6:5064048 Csa06g03367 Csa-Chr6:28038914 0 dispersed
Csa06g00598 Csa-Chr6:5064048 Csa07g02159 Csa-Chr7:20516256 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00598 K01115 - csv:101218942 2078.52