Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00601 ATGGGAAGAGGAAGAGTGGAACTGAAGAGAATAGAGAACAAAATCAACCGCCAAGTTACATTCTCAAAGAGAAGAAACGGACTCCTAAAAAAAGCTTATGAACTCTCTGTTCTATGTGATGCCGAAGTTGCTTTGATCATCTTCTCCACTCGAGGCAAGCTCTACGAATTCGGCAGTGCTGGTACTTCCAAAACATTGGAGCGATACCAACGGTGTTGCTTCTCTCCTCAACACAATTTTGCTGAACGAGAAACCCAGAATTGGTTCCAGGAGATCTCAAAACTGAAAGCTAAATATGAATCTCTTTGTCGCACTCACAGGCATTTGCTTGGGGAAGATCTAGGACCATTGAGTGTAAAGGAGCTCCAAAACCTTGAGAAGCAACTTGAAGCAGCCCTTTCTCAAGCTAGACAAAGGAAGACCCAGATTATGATTGAACAGATGGAAAATCTGCGCAAAAAGGAGCGTCAACTTGGGATCCTCAACAGGGAGCTTAAGCTCAAGCTGGAAGCAGAGGGACAAAATGTTAGAGGGATAGAAAGTTTTTGGAGCTGTGGATCAGGCTCCGGGCATCCCAACAACAACTTTCCATTGCATCATCCTTTACAACCTGACCCTATCGATTGCCAACACCAACCCCTTTTACAAATCGGGTACCAGAATTATTTCTCAGAAGAGGGGCCATCTCATGTCCAAAAGACCATGACATGTGAGACAAACTTCATACAAGGATGGGTTATTTGA 744 44.09 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFGSAGTSKTLERYQRCCFSPQHNFAERETQNWFQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALSQARQRKTQIMIEQMENLRKKERQLGILNRELKLKLEAEGQNVRGIESFWSCGSGSGHPNNNFPLHHPLQPDPIDCQHQPLLQIGYQNYFSEEGPSHVQKTMTCETNFIQGWVI* 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5099335 5104151 + CsaV3_6G006010.1 Csa06g00601 532228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00601 247 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Csa06g00601 247 Pfam K-box region 82 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa06g00601 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa06g00601 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa06g00601 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa06g00601 247 Coils Coil 119 164 - -
Csa06g00601 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa06g00601 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa06g00601 247 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Csa06g00601 247 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa06g00601 247 PANTHER MADS BOX PROTEIN 1 230 - -
Csa06g00601 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa06g00601 247 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Csa06g00601 247 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 230 - -
Csa06g00601 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00601 Csa-Chr6:5099335 Csa06g00820 Csa-Chr6:6576874 1.63E-74 dispersed
Csa06g03736 Csa-Chr6:29814029 Csa06g00601 Csa-Chr6:5099335 2.24E-50 dispersed
Csa06g00601 Csa-Chr6:5099335 Csa06g00602 Csa-Chr6:5105163 1.91E-45 tandem
Csa03g04253 Csa-Chr3:37264443 Csa06g00601 Csa-Chr6:5099335 2.08E-33 transposed
Csa03g01662 Csa-Chr3:12441805 Csa06g00601 Csa-Chr6:5099335 8.86E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31934 PF01486 K-box 6.60E-28 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00601 K09264 - csv:101219421 507.294