Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00602 ATGGTGAGAGGAAAGACACAGATGAGGTTAATAGAGAACGCTACAAGCCGTCAAGTCACCTTCTCCAAGAGAAGAAATGGTTTGATGAAAAAAGCTTTTGAGTTATCGGTTCTCTGTGATGCTGAAGTTGCTCTTATCATCTTCTCCCCTAGAGGAAAGCTTTATGAATTTGCTAGCACGAGCATGCAGGCAACTATAGAGCGTTACCGAAAGCGTGCAAAAGCCAAAGAAGCCCTGGATCCTCCGTTTGTCAATAATATCGTACAGTTGGAGCATCTTAATCATGAAGAAGCAGCTAGCCTGATAAAGAAAATAGAGCAACTCGAAGTTTCAAAACGGAAAATGTTGGGAGAGGATCTGGGATCTTGCTCCCTTGATGAACTTCAACAACTTGAACATCAGTTGGAGAAAAGTGTTTGCAAAATAAGAGCTAGAAAGATAGAAGTGTTTGAAGAACAGATTAAACAGCTAAAGCAAAAGGAAAAAGTGTTGCAGGATGAAAATGCTAAGCTACTTCAAAAGTGGGAAAGTGAGGGAGGAGATGGAGGAGTAAATAATGAAGGAGGAGAGAAAATGTTAAACTACGCAGAAAGTAGCAGTCCAAGTTCTGAGGTGGAGACTGAATTGTTGATTGGGCCACCCAGAAGATTTCTTTCCATTCACTGA 666 41.14 MVRGKTQMRLIENATSRQVTFSKRRNGLMKKAFELSVLCDAEVALIIFSPRGKLYEFASTSMQATIERYRKRAKAKEALDPPFVNNIVQLEHLNHEEAASLIKKIEQLEVSKRKMLGEDLGSCSLDELQQLEHQLEKSVCKIRARKIEVFEEQIKQLKQKEKVLQDENAKLLQKWESEGGDGGVNNEGGEKMLNYAESSSPSSEVETELLIGPPRRFLSIH* 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5105163 5114007 - CsaV3_6G006020.1 Csa06g00602 532229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00602 221 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa06g00602 221 Coils Coil 140 174 - -
Csa06g00602 221 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Csa06g00602 221 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Csa06g00602 221 Pfam K-box region 95 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa06g00602 221 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa06g00602 221 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Csa06g00602 221 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa06g00602 221 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa06g00602 221 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa06g00602 221 PANTHER MADS BOX PROTEIN 1 215 - -
Csa06g00602 221 MobiDBLite consensus disorder prediction 176 208 - -
Csa06g00602 221 MobiDBLite consensus disorder prediction 192 206 - -
Csa06g00602 221 CDD MADS_MEF2_like 3 71 IPR033896 GO:0000977|GO:0045944
Csa06g00602 221 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa06g00602 221 PANTHER MADS-BOX PROTEIN SOC1 1 215 - -
Csa06g00602 221 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g00940 Csa06g00602 CCT
Csa03g00940 Csa06g00602 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00940 Csa-Chr3:7691745 Csa06g00602 Csa-Chr6:5105163 2.69E-75 dispersed
Csa03g01665 Csa-Chr3:12467314 Csa06g00602 Csa-Chr6:5105163 1.35E-58 dispersed
Csa05g00560 Csa-Chr5:3656105 Csa06g00602 Csa-Chr6:5105163 7.05E-58 dispersed
Csa06g00602 Csa-Chr6:5105163 Csa05g03218 Csa-Chr5:31724175 3.30E-46 dispersed
Csa06g00601 Csa-Chr6:5099335 Csa06g00602 Csa-Chr6:5105163 1.91E-45 tandem
Csa05g00336 Csa-Chr5:2144062 Csa06g00602 Csa-Chr6:5105163 9.87E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31935 PF01486 K-box 5.50E-25 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00602 - - csv:101217704 402.905