Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00611 ATGGATGGAATTACACCCCACAATCGCCCTCTTCCTCCTCCTTTCCTCTCCAAAGATCTCCATCTCCACCATGGATTATTCCACGCCCACCACCAAAACTCCGACGACGACCATACCCCCGGACCTAAGAGAGACAGGGACTCCGACGACAACCCCACTATGGACGACGACACCAAAGAATTATCCAACTCTTCTTCTCGTCGCCCACGTGGCCGACCAGCCGGTTCCAAAAACAAGCCAAAGCCACCTATTATTATCACTAGAGATAGCGCCAACGCCCTCAGATCTCATCTCATCGAAATCTCCACCGCCTCCGACATCGTCGATTCCCTCGCCACCTTCGCACGCCGTCGCCAGCGTGGTGTTTGTATTCTTAGCGCCACTGGAACCGTCGCCAACGTCACTCTCCGCCAGCCCTCTTCCCCCGGCGCTGTCATCACCTTACCTGGCAGATTTGAAATTCTCTCCCTCTCCGGTTCTTTCCTCCCACCCCCGGCTCCCCCAGCAGCCTCCGGTCTTACCGTTTACTTGGCTGGCGGGCAGGGGCAGGTCGTCGGTGGGAATGTTATCGGCCCACTTTCGGCATCTGGACCGGTGATTATCATGGCCGCTTCTTTTGGTAATGCTGCGTATGAGCGGCTACCTATTGATGATGAGGATGAAACTTCACCGGCGCCGGATCAGATGGCGGGACAACAAGCGGCTGCAGCACCACCGCCGCCCCAATTGTTGGGGGATCCTAACGGGGGATTGTTTCATGGTATGGCGCAGAATGTTGTGAATTCTTCATGTCAATTGCCGGGGGAAGCAGCGGCGGCGTTTTGGGGAGGAGGTCGGCCACCGTATTGA 849 56.65 MDGITPHNRPLPPPFLSKDLHLHHGLFHAHHQNSDDDHTPGPKRDRDSDDNPTMDDDTKELSNSSSRRPRGRPAGSKNKPKPPIIITRDSANALRSHLIEISTASDIVDSLATFARRRQRGVCILSATGTVANVTLRQPSSPGAVITLPGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVIGPLSASGPVIIMAASFGNAAYERLPIDDEDETSPAPDQMAGQQAAAAPPPPQLLGDPNGGLFHGMAQNVVNSSCQLPGEAAAAFWGGGRPPY* 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5164542 5165906 - CsaV3_6G006110.1 Csa06g00611 532238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00611 282 Gene3D - 94 223 - -
Csa06g00611 282 SUPERFAMILY AF0104/ALDC/Ptd012-like 91 220 - -
Csa06g00611 282 Pfam Plants and Prokaryotes Conserved (PCC) domain 95 207 IPR005175 -
Csa06g00611 282 ProSiteProfiles PPC domain profile profile. 91 229 IPR005175 -
Csa06g00611 282 MobiDBLite consensus disorder prediction 28 66 - -
Csa06g00611 282 MobiDBLite consensus disorder prediction 217 250 - -
Csa06g00611 282 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 18 5 282 - -
Csa06g00611 282 CDD DUF296 95 206 IPR005175 -
Csa06g00611 282 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 5 282 IPR014476 GO:0003680
Csa06g00611 282 MobiDBLite consensus disorder prediction 28 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01009 Csa-Chr3:8151266 Csa06g00611 Csa-Chr6:5164542 6.99E-67 dispersed
Csa06g00611 Csa-Chr6:5164542 Csa06g00649 Csa-Chr6:5397986 3.38E-65 dispersed
Csa07g00219 Csa-Chr7:1744518 Csa06g00611 Csa-Chr6:5164542 1.05E-56 dispersed
Csa03g00960 Csa-Chr3:7828396 Csa06g00611 Csa-Chr6:5164542 1.72E-83 wgd
Csa05g00361 Csa-Chr5:2300479 Csa06g00611 Csa-Chr6:5164542 1.96E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00611 - - csv:101220133 486.108