Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00613 ATGAGTGCCAACCCTAGTACAAGCGGCGGCGGAGGGCCGGGAACTGCCAGTACCGGCGGGAGTGTCGGTGCCGGCGGAGGAGGTCCATGTGGGGCTTGCAAGTTTTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTTGCTCCTTATTTTGACTCCGAGCAAGGGGCAGCTCATTTCGCAGCTGTACACAAGGTGTTTGGAGCTAGCAACGTCTCCAAGCTCCTCCTTCATATTCCCGTCCACAAACGTCTGGATGCCGTCGTCACTATTTGTTACGAGGCTCAAGCCCGCCTCCGAGACCCCGTATACGGTTGCGTTGCTCATATTTTCGCTCTTCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGACGTACCTTCAAGCCCATCTAGCAACACTAGAGCTCCCGTCGCCGCCGAACCCACCTCCGCCACCTCCCCCGCCAAGTTTTCCGGCGCAACCACCGCTTTCTATCTCTGACCTGCCATCGGCTTCCTCCCTGCCGGCCACTTATGACTTGTCGTCGCTCTTCGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAACGGCTCGACCACCGCCAGTTCGCCGGCGGAGGTGGCGGTTCATCCACGGCGCCAGGAGAGGGTGATCTTCAAGCCCTTGCCCGCGAACTCCTCCTTAGACACGGCGCTCCGCCGTGCTCCGACGCCTCGTCGCCGCAATCGCTCTCGAAATGA 723 59.2 MSANPSTSGGGGPGTASTGGSVGAGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELTYLQAHLATLELPSPPNPPPPPPPPSFPAQPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDHRQFAGGGGGSSTAPGEGDLQALARELLLRHGAPPCSDASSPQSLSK* 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5177900 5180689 - CsaV3_6G006130.1 Csa06g00613 532240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00613 240 MobiDBLite consensus disorder prediction 135 155 - -
Csa06g00613 240 MobiDBLite consensus disorder prediction 187 214 - -
Csa06g00613 240 Pfam Lateral organ boundaries (LOB) domain 29 127 IPR004883 -
Csa06g00613 240 ProSiteProfiles LOB domain profile. 28 130 IPR004883 -
Csa06g00613 240 PANTHER LOB DOMAIN-CONTAINING PROTEIN 18 1 224 - -
Csa06g00613 240 MobiDBLite consensus disorder prediction 221 240 - -
Csa06g00613 240 MobiDBLite consensus disorder prediction 134 158 - -
Csa06g00613 240 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00729 Csa-Chr5:5004155 Csa06g00613 Csa-Chr6:5177900 7.22E-42 dispersed
Csa06g00613 Csa-Chr6:5177900 Csa01g00123 Csa-Chr1:692578 3.08E-38 dispersed
Csa06g00613 Csa-Chr6:5177900 Csa06g00614 Csa-Chr6:5189706 3.36E-60 tandem
Csa03g03758 Csa-Chr3:33323707 Csa06g00613 Csa-Chr6:5177900 8.76E-50 transposed
Csa07g01611 Csa-Chr7:16618861 Csa06g00613 Csa-Chr6:5177900 4.88E-45 transposed
Csa03g00963 Csa-Chr3:7849883 Csa06g00613 Csa-Chr6:5177900 1.97E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31936 PF03195 LOB 2.70E-38 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00613 K21994 - csv:101220603 390.193