Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00614 ATGACCCACACCCAAACATCAATTGCCCTCCATCAACATACCCTCATGAGTACCGGCGAAGGCGGCGTCGCTCACGGCGGAGGGCCATGCGGCGCCTGCAAGTTTTTGAGGAGAAAGTGTGTGAAAGGCTGCATTTTCGCACCCTATTTCGACTCTGATCAAGGCGCCGCCCACTTCGCCGCTGTTCATAAGGTGTTTGGAGCTAGCAATGCCTCTAAGCTCCTCCACCGCATCCCACCTCCCAAACGTCTCGACGCTTGCGTTACGCTTTGTTATGAAGCTCTCGCTAGGGTTCGAGACCCTGTCTATGGTTGCGTTTCTCAAATTTTCTCCCTCCAACAACAGGTAGTGAATTTGCAGGCAGAGCTAGCATACATTCAGGCTAAACTTTCCACCTTGCAGCGGTTATTTCCACCGCCACTACACACCCCGTCACCCACCACTTGCAACACTCCGCTACCAGAAGCGATCCCGGACTCGGACATGGGTTTGTTTCCCAATGTTCCAATGCTGCTTGACCCCTTACAAACCCAGCTAGGTTGTAATGAAATGACAAATAGCTTTCTGAACCCAGTTGATTATCAAGATCAGATGGATGAAGATGGTGGTCTTCAATCTTTGGCTCGAGAATTCGTCTCGAGGTGCTTGCCTGGAGTACGAATCCGGCCCCCATGCTCACAGATTTAA 687 51.53 MTHTQTSIALHQHTLMSTGEGGVAHGGGPCGACKFLRRKCVKGCIFAPYFDSDQGAAHFAAVHKVFGASNASKLLHRIPPPKRLDACVTLCYEALARVRDPVYGCVSQIFSLQQQVVNLQAELAYIQAKLSTLQRLFPPPLHTPSPTTCNTPLPEAIPDSDMGLFPNVPMLLDPLQTQLGCNEMTNSFLNPVDYQDQMDEDGGLQSLAREFVSRCLPGVRIRPPCSQI* 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5189706 5192943 + CsaV3_6G006140.1 Csa06g00614 532241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00614 228 ProSiteProfiles LOB domain profile. 28 130 IPR004883 -
Csa06g00614 228 PANTHER LOB DOMAIN CONTAINING PROTEIN 24 217 - -
Csa06g00614 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 19 24 217 - -
Csa06g00614 228 Pfam Lateral organ boundaries (LOB) domain 29 127 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g00963 Csa06g00614 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00963 Csa-Chr3:7849883 Csa06g00614 Csa-Chr6:5189706 1.38E-51 dispersed
Csa03g03758 Csa-Chr3:33323707 Csa06g00614 Csa-Chr6:5189706 2.56E-49 dispersed
Csa06g00614 Csa-Chr6:5189706 Csa07g01611 Csa-Chr7:16618861 3.57E-45 dispersed
Csa06g00613 Csa-Chr6:5177900 Csa06g00614 Csa-Chr6:5189706 3.36E-60 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31937 PF03195 LOB 2.50E-36 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00614 - - csv:101220840 466.077