Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g00625 | ATGGATGGACCAACTGGTCGCAGCGGCGGTGGCATGGATATGAATGTACCAAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCGGAACATGCTTTAACTGGTCATAAAGTTGCTATTAAGATCCTTAACCGCCGAAAGATAAAAAACTTGGATATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGATTGTTCATGCATCCTCACATTATACGGCTCTATGAGGTTATAGAGACCCCATCAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGGGAGCTCTTTGACTATATTGTAGAAAAGGGAAGGTTGCAGGAGGATGAAGCCCGTAATTTTTTCCAACAGATCATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGATCTCAAGCCAGAGAACTTGCTTTTAGACTCTAAATGCAATGTGAAGATTGCTGATTTTGGTTTGAGCAACATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCAGAGGTCATCTCCGGGAAATTATATGCTGGACCTGAAGTAGATGTCTGGAGTTGTGGTGTGATTTTGTATGCTCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTATTCAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATTTATCATCTGGTGCTAGAGAACTGATTCCTAGTATGCTGGTGGTTGACCCAATGAAGCGCATCACGATCCCCGAGATTCGCCAGCACCCATGGTTTCAGGCTCATCTTCCACGCTATTTGGCCGTGCCTCCACCTGATACAATGCAACAGGCAAAAAAGATCGATGAAGACATTCTTCAGGAGGTTGTAAAGATGGGATTTGACAGGAACCAGCTGGTGGAATCTCTTCGTAACCGAATTCAAAACGAGGCTACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTTCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACTGGATTCAACCGTATGCACCCTAGTGATCCTACAAATCCTGCTGTAGGACACCGCCTTCCTGGATATATGGATTATCAAGGAATGGGCTTGAGAGCACAGTTTCCTGTTGAGAGGAAGTGGGCTTTGGGATTACAGTCTCGAGCTCATCCTCGTGAAATTATGACTGAAGTTCTTAAGGCCCTACGGGAGCTTAATGTGGCTTGGAAGAAGATTGGGCACTACAATATGAAATGCAGATGGCTACCTGGAATTCCAGGCCATCATGAAGGCATGATCAACAACCCTGTGCATAGTAATCATTACTTTGGGGATGAGTCTACCATCATTGAAAACGACGGAGTTGTAAAATCGCCGAATGTTATTAAGTTTGAAGTACAGCTGTACAAAACACGCGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCCTTCCTTGCCCAGCTTCGAGTCCTCTAA | 1548 | 43.8 | MDGPTGRSGGGMDMNVPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPSDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNRMHPSDPTNPAVGHRLPGYMDYQGMGLRAQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINNPVHSNHYFGDESTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL* | 516 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5241694 | 5246407 | - | CsaV3_6G006250.1 | Csa06g00625 | 532252 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g00625 | 515 | SUPERFAMILY | KA1-like | 328 | 514 | IPR028375 | - | |
Csa06g00625 | 515 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 138 | 150 | IPR008271 | GO:0004672|GO:0006468 | |
Csa06g00625 | 515 | Pfam | Protein kinase domain | 19 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g00625 | 515 | SUPERFAMILY | Protein kinase-like (PK-like) | 17 | 288 | IPR011009 | - | |
Csa06g00625 | 515 | Pfam | UBA/TS-N domain | 293 | 329 | IPR015940 | - | |
Csa06g00625 | 515 | SMART | serkin_6 | 19 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g00625 | 515 | Gene3D | Transferase(Phosphotransferase) domain 1 | 12 | 349 | - | - | |
Csa06g00625 | 515 | ProSiteProfiles | Kinase associated domain 1 (KA1) profile. | 466 | 514 | IPR001772 | - | |
Csa06g00625 | 515 | SMART | uba_6 | 294 | 331 | IPR015940 | - | |
Csa06g00625 | 515 | ProSiteProfiles | Protein kinase domain profile. | 19 | 271 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g00625 | 515 | SUPERFAMILY | UBA-like | 281 | 330 | IPR009060 | GO:0005515 | |
Csa06g00625 | 515 | Pfam | Kinase associated domain 1 | 472 | 514 | IPR001772 | - | |
Csa06g00625 | 515 | PANTHER | SERINE/THREONINE KINASE | 8 | 514 | - | - | |
Csa06g00625 | 515 | CDD | STKc_AMPK_alpha | 16 | 271 | - | - | |
Csa06g00625 | 515 | CDD | UBA_SnRK1_plant | 293 | 333 | - | - | |
Csa06g00625 | 515 | Gene3D | Kinase associated domain 1, KA1 | 395 | 513 | - | - | |
Csa06g00625 | 515 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 292 | 332 | IPR015940 | - | |
Csa06g00625 | 515 | CDD | AMPKA_C | 389 | 512 | - | - | |
Csa06g00625 | 515 | PANTHER | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 8 | 514 | - | - | |
Csa06g00625 | 515 | ProSitePatterns | Protein kinases ATP-binding region signature. | 25 | 48 | IPR017441 | GO:0005524 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa05g01096 | Csa-Chr5:11145568 | Csa06g00625 | Csa-Chr6:5241694 | 0 | dispersed | |
Csa06g00625 | Csa-Chr6:5241694 | Csa04g01217 | Csa-Chr4:10801059 | 2.99E-89 | dispersed | |
Csa06g01187 | Csa-Chr6:10045067 | Csa06g00625 | Csa-Chr6:5241694 | 2.46E-43 | dispersed | |
Csa06g00625 | Csa-Chr6:5241694 | Csa04g02637 | Csa-Chr4:25743103 | 4.21E-85 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78330 | PF00069 | Pkinase | 1.40E-80 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g00625 | K07198 | - | csv:101211720 | 1021.15 |