Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00625 ATGGATGGACCAACTGGTCGCAGCGGCGGTGGCATGGATATGAATGTACCAAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCGGAACATGCTTTAACTGGTCATAAAGTTGCTATTAAGATCCTTAACCGCCGAAAGATAAAAAACTTGGATATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGATTGTTCATGCATCCTCACATTATACGGCTCTATGAGGTTATAGAGACCCCATCAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGGGAGCTCTTTGACTATATTGTAGAAAAGGGAAGGTTGCAGGAGGATGAAGCCCGTAATTTTTTCCAACAGATCATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTAGTTCACAGAGATCTCAAGCCAGAGAACTTGCTTTTAGACTCTAAATGCAATGTGAAGATTGCTGATTTTGGTTTGAGCAACATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCAGAGGTCATCTCCGGGAAATTATATGCTGGACCTGAAGTAGATGTCTGGAGTTGTGGTGTGATTTTGTATGCTCTTCTATGTGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTATTCAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATTTATCATCTGGTGCTAGAGAACTGATTCCTAGTATGCTGGTGGTTGACCCAATGAAGCGCATCACGATCCCCGAGATTCGCCAGCACCCATGGTTTCAGGCTCATCTTCCACGCTATTTGGCCGTGCCTCCACCTGATACAATGCAACAGGCAAAAAAGATCGATGAAGACATTCTTCAGGAGGTTGTAAAGATGGGATTTGACAGGAACCAGCTGGTGGAATCTCTTCGTAACCGAATTCAAAACGAGGCTACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTTCGTGTTTCTAGTGGCTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACTGGATTCAACCGTATGCACCCTAGTGATCCTACAAATCCTGCTGTAGGACACCGCCTTCCTGGATATATGGATTATCAAGGAATGGGCTTGAGAGCACAGTTTCCTGTTGAGAGGAAGTGGGCTTTGGGATTACAGTCTCGAGCTCATCCTCGTGAAATTATGACTGAAGTTCTTAAGGCCCTACGGGAGCTTAATGTGGCTTGGAAGAAGATTGGGCACTACAATATGAAATGCAGATGGCTACCTGGAATTCCAGGCCATCATGAAGGCATGATCAACAACCCTGTGCATAGTAATCATTACTTTGGGGATGAGTCTACCATCATTGAAAACGACGGAGTTGTAAAATCGCCGAATGTTATTAAGTTTGAAGTACAGCTGTACAAAACACGCGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCCTTCCTTGCCCAGCTTCGAGTCCTCTAA 1548 43.8 MDGPTGRSGGGMDMNVPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPSDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNRMHPSDPTNPAVGHRLPGYMDYQGMGLRAQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINNPVHSNHYFGDESTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL* 516
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 5241694 5246407 - CsaV3_6G006250.1 Csa06g00625 532252
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00625 515 SUPERFAMILY KA1-like 328 514 IPR028375 -
Csa06g00625 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Csa06g00625 515 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00625 515 SUPERFAMILY Protein kinase-like (PK-like) 17 288 IPR011009 -
Csa06g00625 515 Pfam UBA/TS-N domain 293 329 IPR015940 -
Csa06g00625 515 SMART serkin_6 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00625 515 Gene3D Transferase(Phosphotransferase) domain 1 12 349 - -
Csa06g00625 515 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 466 514 IPR001772 -
Csa06g00625 515 SMART uba_6 294 331 IPR015940 -
Csa06g00625 515 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00625 515 SUPERFAMILY UBA-like 281 330 IPR009060 GO:0005515
Csa06g00625 515 Pfam Kinase associated domain 1 472 514 IPR001772 -
Csa06g00625 515 PANTHER SERINE/THREONINE KINASE 8 514 - -
Csa06g00625 515 CDD STKc_AMPK_alpha 16 271 - -
Csa06g00625 515 CDD UBA_SnRK1_plant 293 333 - -
Csa06g00625 515 Gene3D Kinase associated domain 1, KA1 395 513 - -
Csa06g00625 515 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
Csa06g00625 515 CDD AMPKA_C 389 512 - -
Csa06g00625 515 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 514 - -
Csa06g00625 515 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01096 Csa-Chr5:11145568 Csa06g00625 Csa-Chr6:5241694 0 dispersed
Csa06g00625 Csa-Chr6:5241694 Csa04g01217 Csa-Chr4:10801059 2.99E-89 dispersed
Csa06g01187 Csa-Chr6:10045067 Csa06g00625 Csa-Chr6:5241694 2.46E-43 dispersed
Csa06g00625 Csa-Chr6:5241694 Csa04g02637 Csa-Chr4:25743103 4.21E-85 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78330 PF00069 Pkinase 1.40E-80 CL0016 Csa PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00625 K07198 - csv:101211720 1021.15