Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00630 ATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATCGATAAACTGCAATCCAGCTTTCACCAATGGGAAAGGATATCTTCTGATTCTGGAGAGAGAGTACAACAAACGAAAGAGTTGCTCGCTTCATGTGAAAGCATTGAGTGGCAGGTGGATGAACTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCATCTTGGTATGGCATTGATAATGCAGAACTTGAAAAACGAAGGAGATGGACGAGTACAGCTAGGACGCAGGTTGGCAATGTTAAGAAAGTAGTAGGAGCCGGCAAGGAGCAAATAGGAACTGCTAGTGCAAGTGGGATGCGTCGAGAATTGATGAGACTACCTAATGCACATGAAACAGATAGATCAAACTTATATTCAGCCCACCAAGCAAATGATGACTTCATCACATCCGAATCAGACAGACAGCTGCTTCTAATAAAGCAGCAGGACGAAGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACACGAAGAGCTCCTTGCACAGGACAAAATTATCGACGACCTAGGAATGGAAATGGACAGTACTTCAAATCGTCTTGATTTTGTACAGAAAAAAGTAGCTGTGGTCATGAAGAAGGCCAGCGCCAAGGGGCAGATAATGATGATATTGTTTTTGGTGGCTTTGTTCATCATTCTTTTTGTGTTGGTCTTCCTCACCTGA 741 43.72 MPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDSGERVQQTKELLASCESIEWQVDELDKAIAVAARDPSWYGIDNAELEKRRRWTSTARTQVGNVKKVVGAGKEQIGTASASGMRRELMRLPNAHETDRSNLYSAHQANDDFITSESDRQLLLIKQQDEELDELSASVERIGGVGLTIHEELLAQDKIIDDLGMEMDSTSNRLDFVQKKVAVVMKKASAKGQIMMILFLVALFIILFVLVFLT* 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5273781 5277991 - CsaV3_6G006300.1 Csa06g00630 532257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00630 246 Pfam Syntaxin 6, N-terminal 6 99 IPR015260 GO:0016020|GO:0048193
Csa06g00630 246 SUPERFAMILY SNARE fusion complex 153 216 - -
Csa06g00630 246 SMART tSNARE_6 149 216 IPR000727 -
Csa06g00630 246 PANTHER SYNTAXIN-61 1 245 - -
Csa06g00630 246 ProSitePatterns Syntaxin / epimorphin family signature. 160 199 IPR006012 GO:0005484|GO:0006886|GO:0016020
Csa06g00630 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
Csa06g00630 246 Gene3D - 2 104 - -
Csa06g00630 246 Gene3D - 161 225 - -
Csa06g00630 246 SUPERFAMILY t-snare proteins 5 100 IPR010989 GO:0016020|GO:0016192
Csa06g00630 246 Pfam SNARE domain 191 242 IPR000727 -
Csa06g00630 246 CDD SNARE_Qc 157 214 - -
Csa06g00630 246 PANTHER SYNTAXIN 1 245 IPR045242 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00630 Csa-Chr6:5273781 Csa07g01013 Csa-Chr7:9389098 3.11E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00630 K08500 - csv:101212527 428.713