Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00642 ATGTCCTACCCGCCCAACCATGCCCCCTTCCGCTTATTCTTTAATCATTATTCTCCCCAGGCTTCCGCCATGAAAATAAAGCAGAGAAAAACTCAACAAGTTCCCCTTCTTCCATTCAAAAAACAGAGAAGGATGATGAACCAACCTGGAAAATGGGTGGTGCTTGTGGCGGCGATATGGATTCAGGCATTTGCTGGCACAAATTTTGATTTCCCTTCTTATTCTTCCGATCTGAAGGCGGCTCTCGGGATGTCGCAGGTGGAGCTCAACTATCTGGCGGTGGCTTCCGACCTTGGTAAGGCCTTTGGGTGGTGCTCTGGTGTTGCTCTCTTGTATTTTCCTTTGTGGGTTGTGATGTTCATGGCTGCTTCCATGGGATTTCTTGGCTATGGCTTTCAATGGCTTCTCCTTCAAAGGATTATCTCTCTGCCTTACTCCATGGTTTATCTTCTCTGCCTGATGGCTGGATGTAGTATTTGCTGGTTCAATACGGTCTGCTATGTCTCATGCATCCAAAATTTTCCAGCCAACCGTGCGCTTGCACTGTCCTTGATTGTCAGCTTCAATGGCGTCAGTGCAGCTCTATACACTCTAATTGCCAATGCAATAGACCCCAGTGATGCCAGCTTGTACCTCTTCCTAAATGCACTGGTTCCTCTTATCATCTCTGTCGTTGCCCTCCTCCCAATGCTTCATAAGCCACCGGTTCAGCCGTCCTCTGACGATGCCATCCGTCATGACTCCCTCATCTTCATCTGTTTATACATGACGGCCATTATCACAGGGTTGTACTTAATCACCTTCAATTCCATGCCTTCCAACAAATACGGGTCCCAAATTCTGTTAGCAGGGGCTTTTGCTCTTTTAATAGTTCCTCTTTGTTTGCCAGGAGTTCTGAGTACACACAGGTGGTTGGTTCGGATCATATCCACCACTTTGAACTGTCTTATTCACTCTAGATTTAGCCTTGTTGATCATGAGCTTCACCAGGAGCTCATCACTATTGAATCAGAACGAAATAGCATGAAGGGCATCGTCCCTTTTGAATCTAAAGAGAAGGAAAGCATTTCAAGGAAGGTGATGGAGAAAGAGAACTTGGTAGTGCTTGAAGAAGAGCATTCCGCTAAGATGCTCATGCGACAGTTGGATTTTTGGCTCTATTATGCTGCATACTTTTGTGGTGGGACGATTGGGTTGGTTTACAGCAACAGTCTTGGGCAAATTGCACAGTCGCTTGGATACAGTTCATCAACAAGTTCACTTGTAACACTTTACTCTTCTTGCTCCTTCTTTGGGCGGTTAATCTCAGCGGCCCCAGATTTCATGCGTGAGTATGTAGCAACATCAAAAGAAGGGGACATTTCGCGAGAACAGGGTGGCTAG 1383 46.2 MSYPPNHAPFRLFFNHYSPQASAMKIKQRKTQQVPLLPFKKQRRMMNQPGKWVVLVAAIWIQAFAGTNFDFPSYSSDLKAALGMSQVELNYLAVASDLGKAFGWCSGVALLYFPLWVVMFMAASMGFLGYGFQWLLLQRIISLPYSMVYLLCLMAGCSICWFNTVCYVSCIQNFPANRALALSLIVSFNGVSAALYTLIANAIDPSDASLYLFLNALVPLIISVVALLPMLHKPPVQPSSDDAIRHDSLIFICLYMTAIITGLYLITFNSMPSNKYGSQILLAGAFALLIVPLCLPGVLSTHRWLVRIISTTLNCLIHSRFSLVDHELHQELITIESERNSMKGIVPFESKEKESISRKVMEKENLVVLEEEHSAKMLMRQLDFWLYYAAYFCGGTIGLVYSNSLGQIAQSLGYSSSTSSLVTLYSSCSFFGRLISAAPDFMREYVATSKEGDISREQGG* 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5355252 5358770 + CsaV3_6G006420.1 Csa06g00642 532269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00642 460 Pfam Nodulin-like 51 296 IPR010658 -
Csa06g00642 460 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 46 452 - -
Csa06g00642 460 PANTHER NODULIN-LIKE/MFS TRANSPORTER 46 452 - -
Csa06g00642 460 SUPERFAMILY MFS general substrate transporter 43 436 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00699 Csa-Chr4:4726385 Csa06g00642 Csa-Chr6:5355252 1.15E-155 dispersed
Csa04g00701 Csa-Chr4:4741052 Csa06g00642 Csa-Chr6:5355252 1.81E-20 dispersed
Csa06g00642 Csa-Chr6:5355252 Csa07g00091 Csa-Chr7:846941 1.68E-45 dispersed
Csa06g00642 Csa-Chr6:5355252 Csa02g01375 Csa-Chr2:13204393 2.94E-60 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00642 - - csv:101222963 871.307