Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00648 ATGGCCGAGTTTCTCGATTTGGAAGCACAGGACGGCGTTCGGATGCCGTGGAATGTGGTGCCCGGGACCAAGCAAGAAGCTAGCAACTGTATAGTTCCAGTTTCCGCCTTGTACACGCCGATCAAAGCCTTCCCTAACATGCCGGTTCTACCTTACTCTCCGCTTCGATGTCGTACTTGTCGTTCTATTCTTAATCCTTTTTCCATTGTTGATTTTGCTGCAAAGATCTGGATCTGTCCCTTTTGCTTTCAACGGAATCACTTCCCTCCTCATTACGCTTCTATTTCCGATGATAACCTTCCGGCCGAGCTATTTCCGCAGTATACTACTATTGAATACGAGTCGACTGGGGAAACGCCTTCTCCGGTTCCTCCGGTGTTCATGTTTGTGTTGGATACTTGTATAATTGAGGAGGAGATTGCGTTTTTGAAATCTGCTTTGTCTCAGGCTGTTGATCTCCTTCCTGATAATTCGTTGGTTGGGCTCGTTACGTATGGTACTTTTGTTCATGTTCATGAATTGGGGTTCGGTCAGATTCCGAAGACGTTTGTTTTCAAGGGCACCAAGGATGTGTCCAAGGATCAGCTTCTGGAGCAGATGAACTTCTTCCTCAAGAAGCCCAAGCCCCCCACTGGTGTTATTGCTGGTGCTAGAGATGGACTTTCGACTGAGAGTATTGCTCGCTTTTTGCTCCCCAAGTCTGAGTGCGAATTTGCTCTCAATTCAGTTTTGGAGGAGCTACAGAAAGACCCTTGGGGAGTTCCAGCGGATCAGCGAGCCCCGAGGTGCACTGGGACTGCCCTGAGCATTGCCGCCAGCTTGCTAGGCGCTTGTGTTCCTGGTTCAGGAGCAAGAATCTTAGCGTTTGTTGGTGGGCCATCGACCGATGGACCGGGTGCTATTGTGTCTAAAAATTTATCTGAACCAATTCGGTCTCACAAGGACCTGGATAAAGATTCTGCCCCTCATTTTCACAAAGCAGTGAAGTTTTATGAGGGACTCTCAAAGCAGCTAGTTCATCAAGGACATGTACTTGATCTTTTCGCTTGTGCTCTTGATCAGGTCGGCATTGCTGAACTTAAAGTTGCTGTTGAAAAGACTGGAGGGCTTGTTGTGCTTGCCGAAAGTTTTGGTCACTCTGTTTTCAAGGATTCCCTTAAACGTGTTTTTTCTGGAGAATATGATCTCGGCTTATCATCAAATGGTATATTTGAGATCAATTGCTCAAAGGATATCAAAGTTCAGGGAGTTATTGGTCCCTGTGCATCTCTTGAAAAGAAAGGTCCTTTGTGCTCAGACACTGTCATTGGTCAAGGAAATACAAGTGCATGGAAAATGTGTGGTCTTGATAAAGCAACAACTTTGAGTCTCATTTTTGAAGTTGTTAAAAAAGATAACTCGGATGCTGCTGTTCAATCTGCCAGCAATCAGTTTTACTTTCAATTTTTGACGTATTATCAGAACAACAATGGCCAAATGAGACTCCGTGTTACAACACTTTCTAGAAGATGGGTTGCTGGAACTGGAAGCGTACAGGATTTGATTGCGGGGTTTGACCAGGAAGCTGCTGCTGCAATCATGGCACGTCTAGTTTCCTTCAAGATGGAAAACGAGGCAGAGTTTGATCCTATTAGATGGTTGGATAAATCACTGATTCACCTTTGTTCTCGTTTTGGAGATTATCAGAAGGATACTCCATCTTCCTTCAGCTTATCTCCACGTTTCTCAATATTCCCTCAGTTTATCTTTCATTTACGACGATCTCAGTTTGTGCAGGTTTTTAATAACAGTCCTGATGAGACTGCGTACTTCAGAATGATCCTGAACCGTGAGAATGTTGCTAATTCTGTTGTAATGATCCAACCGTCATTGATTTCTTACACATTTCATTCAGCACCAGAACCTGTTCTTCTTGATGTAGCTGCCATTGCAGCTGACAGAATTCTGCTATTGGATGCATATTTCACTGTTGTTATTTTCCACGGGGCAACTATTGCTCAATGGAGAAAAGCTGGGTATCACAATCAACCGGAACATCAGGCATTTGCTCAGTTGCTGCAAGCTCCGCGTGATGATGCAGATGCAACAATTAAGGAGAGATTTCCAGTACCACGTTTGGTGATCTGTGATCAGCATGGCTCGCAGGCACGTTTCCTTCTGGCAAAGCTGAATCCATCAGCCACCTACAACACAGAATCTCCCCTTCCAGGTGGAGATATCATCTTCACGGACGATGTGAGTTTCGAAGTCTTCTTGGATCATCTACAGAGATTAACCGTTCAATAA 2286 44.79 MAEFLDLEAQDGVRMPWNVVPGTKQEASNCIVPVSALYTPIKAFPNMPVLPYSPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDDNLPAELFPQYTTIEYESTGETPSPVPPVFMFVLDTCIIEEEIAFLKSALSQAVDLLPDNSLVGLVTYGTFVHVHELGFGQIPKTFVFKGTKDVSKDQLLEQMNFFLKKPKPPTGVIAGARDGLSTESIARFLLPKSECEFALNSVLEELQKDPWGVPADQRAPRCTGTALSIAASLLGACVPGSGARILAFVGGPSTDGPGAIVSKNLSEPIRSHKDLDKDSAPHFHKAVKFYEGLSKQLVHQGHVLDLFACALDQVGIAELKVAVEKTGGLVVLAESFGHSVFKDSLKRVFSGEYDLGLSSNGIFEINCSKDIKVQGVIGPCASLEKKGPLCSDTVIGQGNTSAWKMCGLDKATTLSLIFEVVKKDNSDAAVQSASNQFYFQFLTYYQNNNGQMRLRVTTLSRRWVAGTGSVQDLIAGFDQEAAAAIMARLVSFKMENEAEFDPIRWLDKSLIHLCSRFGDYQKDTPSSFSLSPRFSIFPQFIFHLRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMIQPSLISYTFHSAPEPVLLDVAAIAADRILLLDAYFTVVIFHGATIAQWRKAGYHNQPEHQAFAQLLQAPRDDADATIKERFPVPRLVICDQHGSQARFLLAKLNPSATYNTESPLPGGDIIFTDDVSFEVFLDHLQRLTVQ* 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5384852 5394190 + CsaV3_6G006480.1 Csa06g00648 532275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00648 761 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 761 IPR037364 -
Csa06g00648 761 Pfam Sec23/Sec24 beta-sandwich domain 401 505 IPR012990 -
Csa06g00648 761 SUPERFAMILY Zn-finger domain of Sec23/24 45 116 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Csa06g00648 761 Gene3D von Willebrand factor, type A domain 124 398 IPR036465 -
Csa06g00648 761 Gene3D Sec23/Sec24 helical domain 516 758 - -
Csa06g00648 761 SUPERFAMILY Helical domain of Sec23/24 519 621 IPR036175 GO:0006886|GO:0006888|GO:0030127
Csa06g00648 761 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 622 761 IPR036180 -
Csa06g00648 761 Pfam Sec23/Sec24 trunk domain 122 390 IPR006896 GO:0006886|GO:0006888|GO:0030127
Csa06g00648 761 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Csa06g00648 761 Pfam Sec23/Sec24 helical domain 519 617 IPR006900 GO:0006886|GO:0006888|GO:0030127
Csa06g00648 761 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 761 - -
Csa06g00648 761 Gene3D Severin 621 725 IPR029006 -
Csa06g00648 761 Gene3D - 51 110 - -
Csa06g00648 761 SUPERFAMILY beta-sandwich domain of Sec23/24 4 518 - -
Csa06g00648 761 Pfam Gelsolin repeat 633 719 IPR007123 -
Csa06g00648 761 CDD Sec23_C 611 731 IPR037550 GO:0030127|GO:0090114
Csa06g00648 761 Gene3D - 8 502 - -
Csa06g00648 761 SUPERFAMILY vWA-like 123 391 IPR036465 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g00756 Csa06g00648 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01015 Csa-Chr2:9861713 Csa06g00648 Csa-Chr6:5384852 3.24E-12 dispersed
Csa03g01583 Csa-Chr3:11737710 Csa06g00648 Csa-Chr6:5384852 0 dispersed
Csa05g02150 Csa-Chr5:24568191 Csa06g00648 Csa-Chr6:5384852 1.80E-39 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00648 K14006 - csv:101211017 1519.21