Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00649 ATGGCTACTTTAAACTTAGGTTCTGCTTCTCACTTTGTTGACCAACTTCAGCAGCAACGCCCTGATCTCCATCTAGATTCCCCTCCAAGTTCTGACCATGTCAACCATTTCAACGGTAGCGGTGGCTCTGGCGGTAGCGGCGATGTCATGGTCCGTCGCCCTAGGGGCCGCCCGGCCGGCTCCAAGAACAAGCCAAAGCCCCCCGTAATCATCACGCGCGAGAGCGCCAACACGCTCCGAGCTCATATCTTGGAAGTTGGTGGTGGATGTGACGTCTTCGAAGCTGTAGCCGGCTACGCTCGGCGACGACAACGTGGGATCTGTGTGTTGAGTGGAAGTGGGATTGTTAATAATGTTAGCTTACGGCAACCCGCAGCTGCTGGATCGGTGTTGACGTTGCAAGGGAGGTTCGAGATTTTGTCGTTGTCGGGATCGTTCTTGCCCCCACCTGCTCCGCCCGGTGCTACTAGTCTTACGATTTTCTTGGCCGGAGGACAAGGGCAAGTGGTAGGAGGGAATGTGGTGGGAGCTTTGATCGCGTCAGGGCCAGTAATCGTCATAGCATCGTCGTTTAGCAACGTTGCATACGAGAGGTTGCCATTGGATGAAGAAGAAATGCCGATGCAGGCTGGTGGCGGTGACGGTGACGGAGGCGAGGGTGGTGGCGAAGGTCACAATAACCCTTTTCCTGATGCATCTTCGGGTTTGCCATTTCTAAATCTGCCTATGAACATGCCCAATCAGAATCAATTTTTTGGTTGA 762 53.81 MATLNLGSASHFVDQLQQQRPDLHLDSPPSSDHVNHFNGSGGSGGSGDVMVRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEVGGGCDVFEAVAGYARRRQRGICVLSGSGIVNNVSLRQPAAAGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFSNVAYERLPLDEEEMPMQAGGGDGDGGEGGGEGHNNPFPDASSGLPFLNLPMNMPNQNQFFG* 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5397986 5399505 + CsaV3_6G006490.1 Csa06g00649 532276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00649 253 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 20 250 - -
Csa06g00649 253 ProSiteProfiles PPC domain profile profile. 76 212 IPR005175 -
Csa06g00649 253 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 20 250 IPR014476 GO:0003680
Csa06g00649 253 MobiDBLite consensus disorder prediction 205 233 - -
Csa06g00649 253 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 193 IPR005175 -
Csa06g00649 253 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 208 - -
Csa06g00649 253 MobiDBLite consensus disorder prediction 21 69 - -
Csa06g00649 253 MobiDBLite consensus disorder prediction 21 42 - -
Csa06g00649 253 PIRSF ESCAROLA 3 251 IPR014476 GO:0003680
Csa06g00649 253 Gene3D - 79 209 - -
Csa06g00649 253 CDD DUF296 80 163 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00424 Csa-Chr1:2655886 Csa06g00649 Csa-Chr6:5397986 1.37E-66 dispersed
Csa03g00181 Csa-Chr3:1347507 Csa06g00649 Csa-Chr6:5397986 9.96E-94 dispersed
Csa03g04619 Csa-Chr3:40121090 Csa06g00649 Csa-Chr6:5397986 4.07E-92 dispersed
Csa05g00361 Csa-Chr5:2300479 Csa06g00649 Csa-Chr6:5397986 1.02E-72 dispersed
Csa05g00730 Csa-Chr5:5009609 Csa06g00649 Csa-Chr6:5397986 1.23E-66 dispersed
Csa06g00611 Csa-Chr6:5164542 Csa06g00649 Csa-Chr6:5397986 3.38E-65 dispersed
Csa03g01009 Csa-Chr3:8151266 Csa06g00649 Csa-Chr6:5397986 1.48E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00649 - - csv:101203160 471.085