Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00652 ATGTACACCGCAGTGCTCCTGGCAGTGATCCCCTTCCTCCTCTGGCTTCTCAAGAATGCAAACCACTTGCTCTACGAAACCGCCCAGTTGGGTTCGAAACGCTTCGCCCTACCGCCCGGCAACCTCGGCTGGCCCTTCATTGGCAATATGTGGTCTTTTCTAAGAGCTTTCAAGTCTCCTTATCCTGATTCTTTCATGGACTCCTTCCTTTCCAGGTATGGAAATACAGGAATGTACAAAGCCTTCATGTTTGGAAGTCCAAGTGTGATTGTAACTTCAGCAGAAGCATGTAAAAGAGTTTTGAATGATGATGAAGCTTTTGGCTCAGGATGGCCTCCTTCCACCATGAAACTCATAGGGGAAAACTCTTTCATTGGCATTTCTAACCAAGAACACAAGCGGCTCCGCCGTATAACCGCTGCTCCGGTCAACGGTTACGACGCTTTGGCCACCTACCTCACTTACATAGAAAAGATTGTGGTTTCTTCCTTGGACAAATGGGGTAATATGGGAGAAATAGAGTTCTTAACAGAGCTCAGAAAGCTTACCTTTAAGATCATTATGTATATATTTCTTAGCTCTGAAAGTGAGACAATAATGGAGGCTTTGGAGAGAGAGTACACGATGCTTAATCTTGGAGTCAGAGCTATGGCCATCAACATTCCTGGTTTTGCTTACTATAAAGCACTCAAGGCACGAAAAAATCTTGAGGCAACATTTGGATCAATTGTGAGAGGGAGAAGGATGGAAAGAGAGAGGAAGGAGAATTCAAAAACAATGAAAAGAGATATGCTGGATGCTTTGCTAGAAGCTGAAGATGAAGATGGAAGAAGGCTAAGTGATGAAGAAATAATTGATGTCTTGATAATGTATTTGAATGCAGGCCATGAATCTTCAGGTCATACTATGATGTGGGCTACCATTTTCTTACAACAACATCCCCATTTTCTTCAAAAGGCCAAGGCCGAGCAAGAAGAGATGATAAAAAAACGACCTGTGGGGCAGAAGGGTTTAACTCTCAAGGAAGTTCGACAAATGCCCTATCTTTCAAAGGTGATCGATGAAACACTACGAGTGGTAACATTCTCACTCACTGTCTTTCGAGAGGCAAAGCATGATGTTAAAATTAGTGGCTATACCATTCCAAAAGGTTGGAAAGTTCTAGTTTGGTTTAGAAGTGTTCACTTCGATTCTGAAACTTATCCAGACCCGAGAGAATTTAATCCTTCAAGATGGGACGATTTCATACCAAAAGCAGGAAGCTTTCTCCCATTTGGAGCAGGAAGTAGATTGTGTCCCGGAAACGATCTTGCAAAACTTGAAATCTCTGTCTTTCTCCATTATTTTCTCCTCAATTATAAGTTGGAAAGGGTTAATCCAGAAAGTCCAATTAGGTATCTACCACATTCAAAACCTGAAGATAACTGTTTGGGAAGGATCAAAAGACTTGTTTAG 1455 42.13 MYTAVLLAVIPFLLWLLKNANHLLYETAQLGSKRFALPPGNLGWPFIGNMWSFLRAFKSPYPDSFMDSFLSRYGNTGMYKAFMFGSPSVIVTSAEACKRVLNDDEAFGSGWPPSTMKLIGENSFIGISNQEHKRLRRITAAPVNGYDALATYLTYIEKIVVSSLDKWGNMGEIEFLTELRKLTFKIIMYIFLSSESETIMEALEREYTMLNLGVRAMAINIPGFAYYKALKARKNLEATFGSIVRGRRMERERKENSKTMKRDMLDALLEAEDEDGRRLSDEEIIDVLIMYLNAGHESSGHTMMWATIFLQQHPHFLQKAKAEQEEMIKKRPVGQKGLTLKEVRQMPYLSKVIDETLRVVTFSLTVFREAKHDVKISGYTIPKGWKVLVWFRSVHFDSETYPDPREFNPSRWDDFIPKAGSFLPFGAGSRLCPGNDLAKLEISVFLHYFLLNYKLERVNPESPIRYLPHSKPEDNCLGRIKRLV* 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5421216 5427632 - CsaV3_6G006520.1 Csa06g00652 532279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00652 484 SUPERFAMILY Cytochrome P450 33 466 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00652 484 Gene3D Cytochrome P450 27 483 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00652 484 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 425 434 IPR017972 GO:0005506|GO:0016705
Csa06g00652 484 PANTHER CYTOCHROME P450 26 12 473 - -
Csa06g00652 484 PRINTS E-class P450 group IV signature 52 75 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00652 484 PRINTS E-class P450 group IV signature 285 311 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00652 484 PRINTS E-class P450 group IV signature 346 362 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00652 484 PRINTS E-class P450 group IV signature 379 393 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00652 484 PRINTS E-class P450 group IV signature 395 413 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00652 484 PRINTS E-class P450 group IV signature 432 450 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00652 484 Pfam Cytochrome P450 38 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00652 484 PRINTS P450 superfamily signature 294 311 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00652 484 PRINTS P450 superfamily signature 351 362 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00652 484 PRINTS P450 superfamily signature 423 432 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00652 484 PRINTS P450 superfamily signature 432 443 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00652 484 PANTHER ENT-KAURENOIC ACID OXIDASE 2 12 473 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04632 Csa-Chr3:40248054 Csa06g00652 Csa-Chr6:5421216 9.69E-165 dispersed
Csa06g03271 Csa-Chr6:27505791 Csa06g00652 Csa-Chr6:5421216 6.69E-67 dispersed
Csa06g03781 Csa-Chr6:30048644 Csa06g00652 Csa-Chr6:5421216 3.80E-28 dispersed
Csa07g01422 Csa-Chr7:14443070 Csa06g00652 Csa-Chr6:5421216 5.79E-73 dispersed
Csa04g00224 Csa-Chr4:1336755 Csa06g00652 Csa-Chr6:5421216 6.18E-25 transposed
Csa03g01017 Csa-Chr3:8181393 Csa06g00652 Csa-Chr6:5421216 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00652 K04123 - csv:101220640 975.696