Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00677 ATGCTCACAACCCAACTCCAGATGGAAGTGCAAGATCACGGTCACATAATTGAAGTGTGTGGAGATGTGCAAGCTGTAGGTCCTAGCATTGTGGGAAGTAAAATTTGTGGGGATGCGCCTTCTTGTGGATTTTCTGATGCAAAGAATAGTTCAAAAGATGCAAAGGAGCGTTCTGCATCCATGCGAAAGCTTTGCATAGCAGTTGTTCTTTGCATTGTTTTTATGAGTGTAGAAGTAGTCGGAGGTATCAAAGCAAACAGTCTTGCAATATTGACTGATGCTGCTCATTTGTTGTCAGATGTTGCTGCTTTTGCTATTTCTTTGTTCTCACTCTGGGCCTCTGGTTGGGAGGCAACTCCACGTCAATCCTATGGTTTCTTCCGCATTGAAATACTTGGTGCTCTTGTTTCCATTCAGATGATCTGGCTTCTAGCTGGAATTCTTGTTTACGAAGCTATTGTCCGTCTCATCAATGGTCCGGGAGAAGTTAAGGGGTTTCTCATGTTTGCTGTTTCTACGTTTGGGTTAGTTGTTAACATAGCCATGGCTCTGCTACTTGGTCACGAACATGGTCATGCCCATTCTCATGGTCACAATCATGGACATGGTGAGCACGACCATGGTCATGGCAGCCACGAACATGGTGAGGAAGATCATAGACATCGTCATGGAATAAGTGTGACCATGCACCACCACCACCATGAAGAGAAGAGAGCTGCCAGCGATGGTGTTGAGCACCACCACCACCATCATCATCACAAACACAAGGAATCAACAACTGTCCCCTTGCTTGATAGTTCACAAAAGGTTACGAAAGCGCAAAAGAAACAACGGAACATAAATGTACAGGGGGCTTATCTTCATGTACTTGGAGATTCCATCCAAAGTATCGGGGTAATGATCGGTGGGGCAATCATATGGTATAAACCAGAATACATGATACTTGATCTGATATGCACCCTCATTTTCTCTGCGATTGTGTTGTGCACAACAATTCAAATGCTTAGAAATATCCTTGAGGTATTGATGGAGAGCACGCCTCGGGAGGTGGACGCAACAAAGCTGGAAAAGGGTTTGTGTGAGATGGAGGAGGTAGTTGCAATCCATGAACTGCACATTTGGGCCATAACTGTTGGGAAGATTCTATTGGCATGTCATGTTATAATAAAGCCAGAGGCAAATGCAGACATGGTATTGGACAAAGTTATTGAGTATATTAGAAGAGAGTACAACATCAGCCATGTTACCATTCAGATAGAGCGTCAATAG 1269 43.97 MLTTQLQMEVQDHGHIIEVCGDVQAVGPSIVGSKICGDAPSCGFSDAKNSSKDAKERSASMRKLCIAVVLCIVFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSLWASGWEATPRQSYGFFRIEILGALVSIQMIWLLAGILVYEAIVRLINGPGEVKGFLMFAVSTFGLVVNIAMALLLGHEHGHAHSHGHNHGHGEHDHGHGSHEHGEEDHRHRHGISVTMHHHHHEEKRAASDGVEHHHHHHHHKHKESTTVPLLDSSQKVTKAQKKQRNINVQGAYLHVLGDSIQSIGVMIGGAIIWYKPEYMILDLICTLIFSAIVLCTTIQMLRNILEVLMESTPREVDATKLEKGLCEMEEVVAIHELHIWAITVGKILLACHVIIKPEANADMVLDKVIEYIRREYNISHVTIQIERQ* 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5544381 5548848 - CsaV3_6G006770.1 Csa06g00677 532304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00677 422 Pfam Cation efflux family 65 343 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Csa06g00677 422 TIGRFAM CDF: cation diffusion facilitator family transporter 61 422 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Csa06g00677 422 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 351 420 IPR036837 -
Csa06g00677 422 MobiDBLite consensus disorder prediction 199 243 - -
Csa06g00677 422 Gene3D Cation efflux protein transmembrane domain 60 342 IPR027469 -
Csa06g00677 422 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 9 421 - -
Csa06g00677 422 MobiDBLite consensus disorder prediction 191 263 - -
Csa06g00677 422 SUPERFAMILY Cation efflux protein transmembrane domain-like 58 344 IPR027469 -
Csa06g00677 422 PANTHER METAL TOLERANCE PROTEIN A1 9 421 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02462 Csa-Chr1:21818584 Csa06g00677 Csa-Chr6:5544381 6.22E-106 dispersed
Csa03g03893 Csa-Chr3:34163313 Csa06g00677 Csa-Chr6:5544381 2.14E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00677 K14689 - csv:101213602 745.347