Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00679 ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCGGCGCTTTGTGCGAAATGTGATGTTGAAGTTCATGCTGCCAATAAGCTTGCGAGTAAACACCAGAGGCTTCTTCTTCAGTGTCTTTCCACCAAGCTACCTAAATGCGATATATGCCAAGACAAGGCAGCTTTCATTTTCTGTGTTGAAGACAGAGCACTGTTTTGTCAAGATTGTGATGAACCAATCCATTCAAGTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGCTGCACGAAGGAAGTTGACAAGGTCAAGATGGAACCTCCAAATCCAAAGAACCCTCAGGTTCCTGCTAAAGTGCCTTCACAACAAGTTCCTAACTTCACGTCCTCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTTGAGTCCTCGGACAAGCAGAAGGAACAACTAGAGTTTGGGGAATTAGAATGGCTAGCAGAAATGGGCCTCTTTGGCGAGCAAGTTCCTCAAGAAGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACATCATACTCAGGTAATGCAATTGCCTGCAGACCGACGAAGTCAAGCACATCATACAAAAAGCCTAGGCTTGAGATGGTTGACGACGAAGAGTTTTTTACGGTTCCTGATCTTGGATGA 714 45.66 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSSGSLSANHQRFLATGIRVAMSSSCTKEVDKVKMEPPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQKEQLEFGELEWLAEMGLFGEQVPQEALAAAEVPELPTSYSGNAIACRPTKSSTSYKKPRLEMVDDEEFFTVPDLG* 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5555910 5558007 - CsaV3_6G006790.1 Csa06g00679 532306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00679 237 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Csa06g00679 237 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Csa06g00679 237 SMART bboxneu5 52 99 IPR000315 GO:0008270
Csa06g00679 237 SMART bboxneu5 4 47 IPR000315 GO:0008270
Csa06g00679 237 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Csa06g00679 237 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
Csa06g00679 237 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 237 - -
Csa06g00679 237 MobiDBLite consensus disorder prediction 116 135 - -
Csa06g00679 237 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Csa06g00679 237 CDD Bbox1_BBX-like 5 47 - -
Csa06g00679 237 CDD Bbox1_BBX-like 56 98 - -
Csa06g00679 237 Gene3D Classic Zinc Finger 1 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00679 - - - csv:101215327 472.241
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00821 Csa-Chr4:5753161 Csa06g00679 Csa-Chr6:5555910 1.50E-45 dispersed
Csa06g00679 Csa-Chr6:5555910 Csa07g00027 Csa-Chr7:395757 2.02E-33 dispersed
Csa06g00679 Csa-Chr6:5555910 Csa02g02104 Csa-Chr2:19152113 1.03E-37 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g00005 . 1 376 Orphan Transcription Factor Family AT5G61850 69.1 1.8e-121 433.0
Csa06g00679 . 1 167 Orphan Transcription Factor Family AT1G06040 68.4 7.3e-61 230.3
Csa04g00821 . 1 126 Orphan Transcription Factor Family AT1G06040 61.9 7.9e-39 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31940 PF00643 zf-B_box 5.20E-08 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g00679 Csa_Chr06 FPKM 78.825966 86.18103 73.260704 71.946754 123.808304 129.436127 126.082291 96.194717 105.118744 96.009567