Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00684 ATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAAGCTTCTTCAACCAAAGCCATGATCATCGTCATCATCATCAACTTCATCATCTTCACTTCTCCAACTTAGACATGCAAAGCTCCACGAGTCATTCGTCCGAGTACTCACCGGAACACTCTCCGTCCGCTGCTGCTGCTGCTGCCACCGCTACTGCCACAGGAAAATGGGCCTCCACCCTTCTTAAGGAGTGTGCTAGAGCCATCTCTGAAAAGGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAATGAGTTGGCTTCCCCTTATGGTGACTCTGATCAAAAAATGGCTTTCTACTTCTTGCAAGCTCTCTTCTGCCGGGCCACAGAAACTGGCCTCACTTGCTACAAAACCCTCGTCGCCGTCGCCGAGAAAAATCATAACTTCGACTCCGCCCTGAGGCTCATCCTCAAGTTTCAAGAGGCAAGTCCATGGACGACATTCGGGCATGTAGCATCGAACGGTGCAATTCTCGAAGCGCTCGAGGGAGAAACGAAACTCCACATCATCGACATAAGCAACACCCTTTGCACTCAGTGGCCAACCCTACTGGAATCCCTAGCCACACGCAATGATGACACTCCACATCTAAAGCTAACGGTGGTGACAACAACAAGTATAGTGAAGTGTTTAATGAAGGAAATTGGACAAAGAATGGAGAAATTTGCAAGGCTAATGGGAGTCCCCTTTGAGTTCAACCCTATAACAAATATCGACCACTTAACTGACCTCACAAATGAAGCCCTCAAAGTAGAAGAAGGTGAGGCCATTGCCATAAATTGCATTGGAGCCTTAAGAAGAGTGAAAGTTGAAGAAAGAAACAATGTGATTTCAATGTTGAAATCACTAAAGCCTAGAGTTTTAACAATAGTAGAGGAAGAAGCTGATTTCATAAGCTCTAAAAATGACTTTTTGAAGTGCTTTGAAGAGTGTCTTAGATTTTACACTCTTTACTTTGAGATGTTGGAAGAGAGCTTTGTGGCAACAAGCAATGAGAGATTGGTTTTGGAAAGAGAATGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGTGATCATGATCAAATTAGTGAGGAAGAAATTGGGAGTGAGAGAAGAGAAAAAGGAAAGCAATGGACAAAAAGGCTCAAACAAGCACTTTTTTCATCAGCTAATTTTAGTGAAGATGTAATGGATGATGTTAAGGCTTTGCTCAAGCGGTACAAACCTGGTTGGGCGTTGCTGCGTCCGGCCACGGCTGCTGTCAGAGACGAAGAAGAAAATGGTGATGGTGAGTCAAGTGGAATTTACTTGACATGGAAGGAAGAACCAGTGGTTTGGGTTTCAGCATGGAAACCCTAA 1380 44.35 MDITFFTAKEAPTSFFNQSHDHRHHHQLHHLHFSNLDMQSSTSHSSEYSPEHSPSAAAAAATATATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMAFYFLQALFCRATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLMGVPFEFNPITNIDHLTDLTNEALKVEEGEAIAINCIGALRRVKVEERNNVISMLKSLKPRVLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLLGCDHDQISEEEIGSERREKGKQWTKRLKQALFSSANFSEDVMDDVKALLKRYKPGWALLRPATAAVRDEEENGDGESSGIYLTWKEEPVVWVSAWKP* 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5597567 5599866 - CsaV3_6G006840.1 Csa06g00684 532311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00684 459 Pfam GRAS domain family 72 458 IPR005202 -
Csa06g00684 459 ProSiteProfiles GRAS family profile. 61 458 IPR005202 -
Csa06g00684 459 PANTHER PROTEIN SHORT-ROOT-LIKE 35 458 - -
Csa06g00684 459 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 35 458 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00684 Csa-Chr6:5597567 Csa06g03022 Csa-Chr6:26029860 6.32E-151 dispersed
Csa06g00684 Csa-Chr6:5597567 Csa03g00440 Csa-Chr3:3721517 4.12E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31941 PF03514 GRAS 2.40E-94 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00684 - - csv:101206730 852.047