Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00684 ATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAAGCTTCTTCAACCAAAGCCATGATCATCGTCATCATCATCAACTTCATCATCTTCACTTCTCCAACTTAGACATGCAAAGCTCCACGAGTCATTCGTCCGAGTACTCACCGGAACACTCTCCGTCCGCTGCTGCTGCTGCTGCCACCGCTACTGCCACAGGAAAATGGGCCTCCACCCTTCTTAAGGAGTGTGCTAGAGCCATCTCTGAAAAGGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAATGAGTTGGCTTCCCCTTATGGTGACTCTGATCAAAAAATGGCTTTCTACTTCTTGCAAGCTCTCTTCTGCCGGGCCACAGAAACTGGCCTCACTTGCTACAAAACCCTCGTCGCCGTCGCCGAGAAAAATCATAACTTCGACTCCGCCCTGAGGCTCATCCTCAAGTTTCAAGAGGCAAGTCCATGGACGACATTCGGGCATGTAGCATCGAACGGTGCAATTCTCGAAGCGCTCGAGGGAGAAACGAAACTCCACATCATCGACATAAGCAACACCCTTTGCACTCAGTGGCCAACCCTACTGGAATCCCTAGCCACACGCAATGATGACACTCCACATCTAAAGCTAACGGTGGTGACAACAACAAGTATAGTGAAGTGTTTAATGAAGGAAATTGGACAAAGAATGGAGAAATTTGCAAGGCTAATGGGAGTCCCCTTTGAGTTCAACCCTATAACAAATATCGACCACTTAACTGACCTCACAAATGAAGCCCTCAAAGTAGAAGAAGGTGAGGCCATTGCCATAAATTGCATTGGAGCCTTAAGAAGAGTGAAAGTTGAAGAAAGAAACAATGTGATTTCAATGTTGAAATCACTAAAGCCTAGAGTTTTAACAATAGTAGAGGAAGAAGCTGATTTCATAAGCTCTAAAAATGACTTTTTGAAGTGCTTTGAAGAGTGTCTTAGATTTTACACTCTTTACTTTGAGATGTTGGAAGAGAGCTTTGTGGCAACAAGCAATGAGAGATTGGTTTTGGAAAGAGAATGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGTGATCATGATCAAATTAGTGAGGAAGAAATTGGGAGTGAGAGAAGAGAAAAAGGAAAGCAATGGACAAAAAGGCTCAAACAAGCACTTTTTTCATCAGCTAATTTTAGTGAAGATGTAATGGATGATGTTAAGGCTTTGCTCAAGCGGTACAAACCTGGTTGGGCGTTGCTGCGTCCGGCCACGGCTGCTGTCAGAGACGAAGAAGAAAATGGTGATGGTGAGTCAAGTGGAATTTACTTGACATGGAAGGAAGAACCAGTGGTTTGGGTTTCAGCATGGAAACCCTAA 1380 44.35 MDITFFTAKEAPTSFFNQSHDHRHHHQLHHLHFSNLDMQSSTSHSSEYSPEHSPSAAAAAATATATGKWASTLLKECARAISEKDSNKIHHFLWMLNELASPYGDSDQKMAFYFLQALFCRATETGLTCYKTLVAVAEKNHNFDSALRLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTSIVKCLMKEIGQRMEKFARLMGVPFEFNPITNIDHLTDLTNEALKVEEGEAIAINCIGALRRVKVEERNNVISMLKSLKPRVLTIVEEEADFISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLVLERECSRSIVRLLGCDHDQISEEEIGSERREKGKQWTKRLKQALFSSANFSEDVMDDVKALLKRYKPGWALLRPATAAVRDEEENGDGESSGIYLTWKEEPVVWVSAWKP* 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5597567 5599866 - CsaV3_6G006840.1 Csa06g00684 532311

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00684 459 Pfam GRAS domain family 72 458 IPR005202 -
Csa06g00684 459 ProSiteProfiles GRAS family profile. 61 458 IPR005202 -
Csa06g00684 459 PANTHER PROTEIN SHORT-ROOT-LIKE 35 458 - -
Csa06g00684 459 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 35 458 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00684 - - - csv:101206730 852.047
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00684 Csa-Chr6:5597567 Csa06g03022 Csa-Chr6:26029860 6.32E-151 dispersed
Csa06g00684 Csa-Chr6:5597567 Csa03g00440 Csa-Chr3:3721517 4.12E-46 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g03178 . 74 752 GRAS Transcription Factor Family AT2G37650 54.0 1.8e-198 689.5
Csa01g02434 . 316 698 GRAS Transcription Factor Family AT3G46600 56.1 6.9e-126 448.0
Csa06g03008 . 21 443 GRAS Transcription Factor Family AT3G49950 59.2 8.8e-134 473.8
Csa04g00740 . 71 442 GRAS Transcription Factor Family AT5G41920 71.2 9.6e-149 523.5
Csa04g01154 . 462 838 GRAS Transcription Factor Family AT5G41920 56.6 3.1e-115 412.1
Csa06g03233 . 1 610 GRAS Transcription Factor Family AT5G66770 59.1 1.5e-182 636.3
Csa04g00507 . 1 590 GRAS Transcription Factor Family AT5G66770 56.5 3.3e-174 608.6
Csa06g00941 . 57 546 GRAS Transcription Factor Family AT1G50600 59.6 1.5e-162 569.7
Csa03g00440 . 46 544 GRAS Transcription Factor Family AT1G50600 56.9 2.5e-157 552.4
Csa06g03453 . 103 542 GRAS Transcription Factor Family AT1G50600 55.1 6.8e-139 491.1
Csa03g02273 . 202 593 GRAS Transcription Factor Family AT1G50600 57.7 7.3e-133 471.1
Csa05g02016 . 44 581 GRAS Transcription Factor Family AT1G14920 68.0 3.1e-208 721.5
Csa05g01594 . 53 600 GRAS Transcription Factor Family AT1G14920 61.4 1.0e-182 636.7
Csa03g02085 . 30 554 GRAS Transcription Factor Family AT1G14920 55.1 1.7e-153 539.7
Csa03g00359 . 1 364 GRAS Transcription Factor Family AT1G55580 50.6 6.7e-103 371.3
Csa05g01594 . 51 597 GRAS Transcription Factor Family AT1G66350 61.6 2.4e-181 632.1
Csa05g02016 . 1 579 GRAS Transcription Factor Family AT1G66350 57.1 1.8e-173 605.9
Csa03g02085 . 1 553 GRAS Transcription Factor Family AT1G66350 54.7 9.2e-157 550.4
Csa06g00941 . 19 546 GRAS Transcription Factor Family AT5G48150 66.5 6.3e-195 677.2
Csa03g00440 . 19 544 GRAS Transcription Factor Family AT5G48150 57.2 7.2e-167 583.9
Csa06g03453 . 96 542 GRAS Transcription Factor Family AT5G48150 57.9 8.9e-149 523.9
Csa03g02273 . 113 593 GRAS Transcription Factor Family AT5G48150 51.5 5.0e-136 481.5
Csa05g02016 . 46 578 GRAS Transcription Factor Family AT2G01570 69.1 5.2e-212 734.2
Csa05g01594 . 55 598 GRAS Transcription Factor Family AT2G01570 62.9 1.2e-189 659.8
Csa03g02085 . 30 554 GRAS Transcription Factor Family AT2G01570 56.5 7.3e-158 554.3
Csa05g01594 . 51 597 GRAS Transcription Factor Family AT1G66350 61.6 2.4e-181 632.1
Csa05g02016 . 1 579 GRAS Transcription Factor Family AT1G66350 57.1 1.8e-173 605.9
Csa03g02085 . 1 553 GRAS Transcription Factor Family AT1G66350 54.7 9.2e-157 550.4
Csa05g01594 . 55 598 GRAS Transcription Factor Family AT3G03450 61.5 1.2e-178 623.2
Csa05g02016 . 46 578 GRAS Transcription Factor Family AT3G03450 59.8 7.8e-170 594.0
Csa03g02085 . 30 554 GRAS Transcription Factor Family AT3G03450 56.5 3.9e-153 538.5
Csa05g01594 . 48 600 GRAS Transcription Factor Family AT5G17490 56.1 1.6e-159 559.7
Csa05g02016 . 42 578 GRAS Transcription Factor Family AT5G17490 56.6 3.0e-155 545.4
Csa03g02085 . 26 554 GRAS Transcription Factor Family AT5G17490 52.1 3.0e-134 475.7
Csa07g01411 . 1 571 GRAS Transcription Factor Family AT1G21450 57.9 7.4e-174 607.4
Csa03g00440 . 168 544 GRAS Transcription Factor Family AT1G21450 51.1 2.6e-110 396.4
Csa03g02273 . 225 593 GRAS Transcription Factor Family AT1G21450 50.3 6.0e-107 385.2
Csa01g02434 . 324 698 GRAS Transcription Factor Family AT5G59450 56.5 5.3e-127 451.8
Csa06g03453 . 1 541 GRAS Transcription Factor Family AT4G17230 58.1 1.2e-172 603.2
Csa03g00440 . 49 544 GRAS Transcription Factor Family AT4G17230 51.9 1.5e-133 473.4
Csa03g02273 . 220 593 GRAS Transcription Factor Family AT4G17230 52.1 3.0e-110 396.0
Csa06g00941 . 134 546 GRAS Transcription Factor Family AT2G04890 66.7 6.5e-161 563.9
Csa03g00440 . 147 544 GRAS Transcription Factor Family AT2G04890 59.4 8.3e-140 493.8
Csa03g02273 . 206 593 GRAS Transcription Factor Family AT2G04890 55.7 8.0e-127 450.7
Csa06g03453 . 161 542 GRAS Transcription Factor Family AT2G04890 57.6 4.9e-124 441.4
Csa05g02830 . 12 473 GRAS Transcription Factor Family AT1G50420 60.8 5.1e-157 551.2
Csa01g03195 . 1 436 GRAS Transcription Factor Family AT1G50420 60.2 3.8e-152 535.0
Csa03g00280 . 411 774 GRAS Transcription Factor Family AT4G00150 56.3 1.1e-105 380.9
Csa04g00507 . 1 590 GRAS Transcription Factor Family AT3G50650 52.2 5.4e-155 544.7
Csa06g03233 . 1 610 GRAS Transcription Factor Family AT3G50650 50.9 8.0e-151 530.8
Csa04g01154 . 183 836 GRAS Transcription Factor Family AT3G54220 60.2 2.3e-205 712.2
Csa04g00740 . 75 443 GRAS Transcription Factor Family AT3G54220 64.5 3.9e-136 482.3
Csa06g03022 . 90 490 GRAS Transcription Factor Family AT4G37650 67.6 4.6e-159 558.1
Csa02g01459 . 100 493 GRAS Transcription Factor Family AT4G37650 56.6 2.2e-124 443.0
Csa06g00684 . 68 459 GRAS Transcription Factor Family AT4G37650 50.1 7.9e-111 397.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010856 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31941 PF03514 GRAS 2.40E-94 CL0063 Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g00684 Csa_Chr06 FPKM 2.599835 3.120972 6.403765 5.239781 5.609829 6.21066 6.055943 6.469069 6.517942 7.650969