Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00720 ATGGAGCTGGATGGCATCGATGGTATGCCATCCATGGATGTGATGGACGAGGAAGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGAATCAACAATAACGACAATCCCACAACCACAAGTGTCCATGAGCTTCTTGAATGTCCTGTTTGTACCAATTCTATGTATCCCCCAATTCATCAGTGTCCCAATGGGCATACCCTCTGTTCTTCGTGTAAAACAAGGGTAGACAACCGTTGCCCGACATGCAGGCAAGAGCTCGGTGATATCAGATGTCTAGCATTAGAAAAAATAGCTGAATCGCTTAAACTGGCTTGTAAATTCTCCACATTTGGGTGCCAGGAGATATTGCCTTACTACAGCAAACTCAAACATGAATCTGCCTGTTACTATAGACCATATACCTGCCCTTATGCTGGATCAGACTGCCCAATTGATGGCAATATTCCTTTCCTTGTTTCCCATCTTCGGGATGATCACAAGGTCGATATGCATTCTGGATGCACGTTTAATCATCGTTATGTAAAGGCTAATCCATGCGAAGTCGAAAACGCCACATGGATGCTAACTGTCTTCCACTGCTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTATGGCACCAGTTTACATGGCATTTCTGCGATTCATGGGGGACGAAACCGACGCTCGAAACTTCAGTTACAGCCTCGAGGTTGGTGGAAATGGTAGGAAGCTGATATGGGAAGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAAGTTAGGGACAGCCATGACGGTCTCATTATACAACGAAACATGGCGCTGTTCTTTTCGGGAGGAGAAAGGAAAGAGCTGAAGCTGCGGATCACGGGACGGATTTGGAAAGAACAAAATAAACAGTAA 915 45.68 MELDGIDGMPSMDVMDEEDKTLQRHCQFPSISKPRINNNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFSTFGCQEILPYYSKLKHESACYYRPYTCPYAGSDCPIDGNIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNFSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELKLRITGRIWKEQNKQ* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5872376 5875762 + CsaV3_6G007200.1 Csa06g00720 532347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00720 304 PANTHER UBIQUITIN LIGASE SINAT3 9 302 - -
Csa06g00720 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 9 302 - -
Csa06g00720 304 CDD Sina 167 295 - -
Csa06g00720 304 ProSiteProfiles Zinc finger SIAH-type profile. 106 166 IPR013010 GO:0008270
Csa06g00720 304 SUPERFAMILY RING/U-box 47 111 - -
Csa06g00720 304 SUPERFAMILY TRAF domain-like 106 298 - -
Csa06g00720 304 CDD RING-HC_SIAHs 51 89 - -
Csa06g00720 304 ProSiteProfiles Zinc finger RING-type profile. 53 89 IPR001841 -
Csa06g00720 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 95 IPR013083 -
Csa06g00720 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 161 IPR013083 -
Csa06g00720 304 Pfam Seven in absentia protein family 95 294 IPR018121 GO:0005737|GO:0006511|GO:0007275
Csa06g00720 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 294 IPR008974 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01989 Csa-Chr3:15655856 Csa06g00720 Csa-Chr6:5872376 2.08E-179 dispersed
Csa03g01990 Csa-Chr3:15666843 Csa06g00720 Csa-Chr6:5872376 2.14E-179 dispersed
Csa05g02847 Csa-Chr5:28844932 Csa06g00720 Csa-Chr6:5872376 5.63E-166 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00720 K04506 - csv:101209363 656.366