Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00794 ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAGTTGAATCCTGAAAAGGAAAGCGATGATGGTAAGCAAGACCATCCAATGGTTCCACCAAACATTGCCAAGTTGCCTTCTGGAATAGACAAACTTAGATCGAAAAGTAATGGAGGTTCCAAAAGGGAACAGCAGATTCCCACACCTCTTGTCAATATTTCTGCTCAAACATTCACTTTTCGTGAGCTTGCAACAGCTACGAAGAATTTTAGACCAGAGTGTTTTATTGGGGAAGGGGGATTTGGACGTGTATACAAAGGGCGGCTCGAAAGCACAAGCCAGATTGTTGCTGTTAAACAGTTGGATAGGAATGGTCTTCAAGGCAACAGAGAATTCCTAGTGGAAGTTCTCATGCTTAGCCTTCTGCATCATCCAAATCTGGTGAATCTGATTGGTTACTGTGCTGATGGAGATCAACGACTTCTTGTGTATGAGTTCATGCCTTTGGGATCATTGGAAGACCATCTTCACGAAATTCCACCTGAGAAGGAACCCCTAGATTGGAACACAAGGATGAAAATTGCTGCTGGTGCAGCCAGAGGTCTAGAGTACTTGCATGACAAAGCCAACCCTCCAGTTATTTATAGAGACTTCAAATCTTCCAATATATTACTTGATGAAGGATACCATCCAAAGCTTTCTGATTTTGGCCTTGCAAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACCAGGGTTATGGGAACATATGGTTACTGTGCTCCCGAATACGCCATGACTGGACAATTAACTGTCAAATCTGATGTTTATAGTTTCGGTGTTGTCTTCTTAGAGTTGATTACTGGAAGGAGAGCCATTGATAGCACCCGACCCCAAGGAGAACAGAATCTTGTTACATGGGCACGCCCGTTTTTTAACGATCGCAGAAGATTCTCAAAATTGGCTGATCCACAGTTGCAGGGGCGGTATCCGATGAGAGGTCTCTACCAGGCTTTAGCTGTGGCATCCATGTGTACGCAAGAACAGGCTGCCGCCCGTCCGCTCATTGGAGATGTGGTTACTGCGCTGTCTTATTTAGCAAATCAATCCTACGATCCGAGTTCTCCTTCAGGTACTGCTGCTGCTGGTACTGCTGCTCAGAGAGGTTCTGGTGACCGGGATGAAAGACGGAATAGAGACGAGAAAGGTGGAGGAGGGATGGTAAAGAATGAAGAAGGTGGAGCATCTGGACGAAGGTGGCCATTGGATGGTCCCGAGAAGGACGATTCCCCAAGGGAGACTGCTAGGATTTTGAATAGGGATTTAGACAGAGAACGTGCAGTTGCCGAGGCCAAGATGTGGGGAGAAAATTGGCGAGAAAAACGACGGCAGAGCACACAAGGCAGTTTTGATGGATCTAATGGATAA 1410 46.03 MGCFPCFDSREEEKLNPEKESDDGKQDHPMVPPNIAKLPSGIDKLRSKSNGGSKREQQIPTPLVNISAQTFTFRELATATKNFRPECFIGEGGFGRVYKGRLESTSQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPEKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSYDPSSPSGTAAAGTAAQRGSGDRDERRNRDEKGGGGMVKNEEGGASGRRWPLDGPEKDDSPRETARILNRDLDRERAVAEAKMWGENWREKRRQSTQGSFDGSNG* 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6377052 6383304 - CsaV3_6G007940.1 Csa06g00794 532421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00794 469 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Csa06g00794 469 Gene3D Transferase(Phosphotransferase) domain 1 160 372 - -
Csa06g00794 469 Gene3D Phosphorylase Kinase; domain 1 67 159 - -
Csa06g00794 469 MobiDBLite consensus disorder prediction 415 460 - -
Csa06g00794 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Csa06g00794 469 MobiDBLite consensus disorder prediction 1 60 - -
Csa06g00794 469 MobiDBLite consensus disorder prediction 383 401 - -
Csa06g00794 469 ProSiteProfiles Protein kinase domain profile. 83 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00794 469 MobiDBLite consensus disorder prediction 7 27 - -
Csa06g00794 469 CDD STKc_IRAK 89 357 - -
Csa06g00794 469 SUPERFAMILY Protein kinase-like (PK-like) 59 357 IPR011009 -
Csa06g00794 469 PANTHER OS07G0668900 PROTEIN 1 464 - -
Csa06g00794 469 Pfam Protein kinase domain 88 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00794 469 MobiDBLite consensus disorder prediction 365 469 - -
Csa06g00794 469 PANTHER SERINE/THREONINE-PROTEIN KINASE PBS1 1 464 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01426 Csa-Chr3:10668107 Csa06g00794 Csa-Chr6:6377052 0 dispersed
Csa03g03235 Csa-Chr3:29698154 Csa06g00794 Csa-Chr6:6377052 0 dispersed
Csa04g00130 Csa-Chr4:737541 Csa06g00794 Csa-Chr6:6377052 4.34E-103 dispersed
Csa06g00794 Csa-Chr6:6377052 Csa07g01499 Csa-Chr7:15365200 3.31E-174 dispersed
Csa06g00794 Csa-Chr6:6377052 Csa05g00641 Csa-Chr5:4259160 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78333 PF00069 Pkinase 2.80E-45 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00794 K13430 - csv:101219880 934.865