Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00805 ATGGCAGACCAAAACAACAACAACAACAACAAGCATCACCCATTACTTCCTTCTCCTGCAACTTCTTCATCTCCATTAACAACACCTCCATTACCTACAACTTCTTCAGATATCAAAGACTTCACTCTCATTATTTCAAACAAAGATCAAAACAACAGCAACAGCAACAACAACATCAACAACAAGCAATTGGCTCCTAAACGTACCTCTAATAAAGACCGTCATAAAAAAGTCGATGGCCGTGGTCGTAGAATCCGTATGCCTGCTCTTTGTGCTGCTCGTGTCTTTCAATTAACTCGTGAATTGGGTCATAAAACTGATGGGGAGACCATTCAATGGCTTCTTCAACAAGCTGAGCCTTCTATTATTGCTGCCACTGGCTCCGGTACTATCCCCGCTTCTGCTCTTCATGCTGTTGGTGTTTCCCTTTCCGATCATGATTCCTCTGTTTCCGTCTCTGCTTCTTTAACCCCTAAAATCGAAGCGGTTCCCAGGACCAATTGGGCGATGATGGGTGCTAATTTGAGTAGATCTCATATGGCCTCCCAGGGGTTTTGGCCCTCTTTAGGTGGGATTGGGACTGGATTTGTTAGTGAGAATCCGGGGTCGATTATGCCCAAGTTTGGGTTTCATGGGTTTGAACTTCAGGGGATGAATTTGGGATCCGTGAATTTCCCGGCCATGATTGGGAATCAACATCAACAAATACCTGGGTTGGAGTTGGGGCTTTCGCAGGATGGGAATAATTTGAGAGGGATGTTGAATCCGCCTTCGTTTTCGCAAATTTATCATCAAATTGGCCAAAATCGTGATTCCTCTGCACAGCCATTGGAGCAGGATCAAGCTCCTGAGAAAGATGATTCTCAAGAATCGAGATGA 879 44.71 MADQNNNNNNKHHPLLPSPATSSSPLTTPPLPTTSSDIKDFTLIISNKDQNNSNSNNNINNKQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDHDSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMASQGFWPSLGGIGTGFVSENPGSIMPKFGFHGFELQGMNLGSVNFPAMIGNQHQQIPGLELGLSQDGNNLRGMLNPPSFSQIYHQIGQNRDSSAQPLEQDQAPEKDDSQESR* 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6456718 6457596 - CsaV3_6G008050.1 Csa06g00805 532432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00805 292 MobiDBLite consensus disorder prediction 1 83 - -
Csa06g00805 292 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 35 292 - -
Csa06g00805 292 MobiDBLite consensus disorder prediction 267 292 - -
Csa06g00805 292 ProSiteProfiles TCP domain profile. 71 125 IPR017887 -
Csa06g00805 292 MobiDBLite consensus disorder prediction 1 66 - -
Csa06g00805 292 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 35 292 IPR005333 GO:0003700
Csa06g00805 292 Pfam TCP family transcription factor 69 165 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00596 Csa-Chr6:5060846 Csa06g00805 Csa-Chr6:6456718 9.44E-36 dispersed
Csa06g00805 Csa-Chr6:6456718 Csa06g02596 Csa-Chr6:22896867 4.46E-35 dispersed
Csa03g02480 Csa-Chr3:23172125 Csa06g00805 Csa-Chr6:6456718 6.57E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31948 PF03634 TCP 7.20E-31 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00805 - - csv:105435771 514.612