Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00818 ATGTATTGGGAACTCAGGGGCATTGGTAATATGGATGAAAGATCTATGGATGACATGAAAGGAACTCGAGTTGCTTTGATTGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGTGGAGCCCAAGTCCCTTCGTGTATGGTAGATGGCTGCAGTTCGGACCTTAGCAAATGCAGGGACTATCATCGCCGTCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATAGAAAACGAAGTTGTAGGAAACGCCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCAACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCCTTTGGCAATCAATTACTGACTGCCAGCAGTGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAACAATGTGCCGCTTTGTGGTGGCAACTCACAGTTTGACTTTACTGACAGAAGAAAAAGTATGTTGCCCGGTTCGTTGTCTTCTGATTACAAAGAAAAACAACTAGCAATCTCTTGCATCCCTATAGGACTGCTTCCCAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCAACGGTGGGAATGTTCAGAAAGTGCTCGGAAACGGATCGAATCGGTTCTTCGACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCCCCCCAGCCCATTTCATCCACAGCGACGGTCTTGGCTTGGAGGGTGACCCCATTAGTTCTGGTTTAGTCTCGGACGGTAGCAGCGATGCCAACATCCGTTGCTACTCAACATTCCAGGACGGACCTGATGGATCATCTGTTGATCTATTCAGGTTTTGA 987 46.71 MYWELRGIGNMDERSMDDMKGTRVALIESSSSRLMKRSRAPGSGAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLTASSDVSSSWIGMIKPENNVPLCGGNSQFDFTDRRKSMLPGSLSSDYKEKQLAISCIPIGLLPKSSDTQPFLNVGSSNGGNVQKVLGNGSNRFFDSDCALSLLSTPVEPGEINLSSMSQSNLIPPAHFIHSDGLGLEGDPISSGLVSDGSSDANIRCYSTFQDGPDGSSVDLFRF* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6551819 6555426 + CsaV3_6G008180.1 Csa06g00818 532445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00818 328 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677
Csa06g00818 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 8 321 - -
Csa06g00818 328 Gene3D - 41 111 IPR036893 GO:0003677|GO:0005634
Csa06g00818 328 Pfam SBP domain 50 123 IPR004333 GO:0003677
Csa06g00818 328 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677|GO:0005634
Csa06g00818 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 8 321 IPR044817 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00338 Csa-Chr1:2115257 Csa06g00818 Csa-Chr6:6551819 1.03E-43 dispersed
Csa01g00620 Csa-Chr1:3954235 Csa06g00818 Csa-Chr6:6551819 8.30E-40 dispersed
Csa06g00818 Csa-Chr6:6551819 Csa06g00914 Csa-Chr6:7354343 7.78E-32 dispersed
Csa03g00745 Csa-Chr3:6629147 Csa06g00818 Csa-Chr6:6551819 9.82E-35 transposed
Csa03g03589 Csa-Chr3:32029162 Csa06g00818 Csa-Chr6:6551819 2.37E-38 transposed
Csa04g02750 Csa-Chr4:26359110 Csa06g00818 Csa-Chr6:6551819 3.19E-35 transposed
Csa01g00045 Csa-Chr1:262037 Csa06g00818 Csa-Chr6:6551819 1.31E-50 wgd
Csa01g00976 Csa-Chr1:6034554 Csa06g00818 Csa-Chr6:6551819 1.57E-53 wgd
Csa03g02486 Csa-Chr3:23310445 Csa06g00818 Csa-Chr6:6551819 9.54E-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31949 PF03110 SBP 7.40E-29 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00818 - - csv:101217032 674.855