Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00818 ATGTATTGGGAACTCAGGGGCATTGGTAATATGGATGAAAGATCTATGGATGACATGAAAGGAACTCGAGTTGCTTTGATTGAGTCATCGTCTTCGAGATTAATGAAGAGGTCACGTGCCCCTGGAAGTGGAGCCCAAGTCCCTTCGTGTATGGTAGATGGCTGCAGTTCGGACCTTAGCAAATGCAGGGACTATCATCGCCGTCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAATGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATAGAAAACGAAGTTGTAGGAAACGCCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCAGCAACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCCTTTGGCAATCAATTACTGACTGCCAGCAGTGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAACAATGTGCCGCTTTGTGGTGGCAACTCACAGTTTGACTTTACTGACAGAAGAAAAAGTATGTTGCCCGGTTCGTTGTCTTCTGATTACAAAGAAAAACAACTAGCAATCTCTTGCATCCCTATAGGACTGCTTCCCAAATCATCTGATACTCAGCCATTTCTCAACGTTGGATCCAGCAACGGTGGGAATGTTCAGAAAGTGCTCGGAAACGGATCGAATCGGTTCTTCGACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCCCCCCAGCCCATTTCATCCACAGCGACGGTCTTGGCTTGGAGGGTGACCCCATTAGTTCTGGTTTAGTCTCGGACGGTAGCAGCGATGCCAACATCCGTTGCTACTCAACATTCCAGGACGGACCTGATGGATCATCTGTTGATCTATTCAGGTTTTGA 987 46.71 MYWELRGIGNMDERSMDDMKGTRVALIESSSSRLMKRSRAPGSGAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLTASSDVSSSWIGMIKPENNVPLCGGNSQFDFTDRRKSMLPGSLSSDYKEKQLAISCIPIGLLPKSSDTQPFLNVGSSNGGNVQKVLGNGSNRFFDSDCALSLLSTPVEPGEINLSSMSQSNLIPPAHFIHSDGLGLEGDPISSGLVSDGSSDANIRCYSTFQDGPDGSSVDLFRF* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6551819 6555426 + CsaV3_6G008180.1 Csa06g00818 532445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00818 328 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677
Csa06g00818 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 8 321 - -
Csa06g00818 328 Gene3D - 41 111 IPR036893 GO:0003677|GO:0005634
Csa06g00818 328 Pfam SBP domain 50 123 IPR004333 GO:0003677
Csa06g00818 328 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677|GO:0005634
Csa06g00818 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 8 321 IPR044817 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00818 - - - csv:101217032 674.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00338 Csa-Chr1:2115257 Csa06g00818 Csa-Chr6:6551819 1.03E-43 dispersed
Csa01g00620 Csa-Chr1:3954235 Csa06g00818 Csa-Chr6:6551819 8.30E-40 dispersed
Csa06g00818 Csa-Chr6:6551819 Csa06g00914 Csa-Chr6:7354343 7.78E-32 dispersed
Csa03g00745 Csa-Chr3:6629147 Csa06g00818 Csa-Chr6:6551819 9.82E-35 transposed
Csa03g03589 Csa-Chr3:32029162 Csa06g00818 Csa-Chr6:6551819 2.37E-38 transposed
Csa04g02750 Csa-Chr4:26359110 Csa06g00818 Csa-Chr6:6551819 3.19E-35 transposed
Csa01g00045 Csa-Chr1:262037 Csa06g00818 Csa-Chr6:6551819 1.31E-50 wgd
Csa01g00976 Csa-Chr1:6034554 Csa06g00818 Csa-Chr6:6551819 1.57E-53 wgd
Csa03g02486 Csa-Chr3:23310445 Csa06g00818 Csa-Chr6:6551819 9.54E-47 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g02851 . 181 1014 SBP-box Gene Family AT2G47070 55.5 1.3e-239 826.2
Csa03g02851 . 25 1014 SBP-box Gene Family AT3G60030 54.5 8.6e-278 953.4
Csa06g00818 . 15 163 SBP-box Gene Family AT5G50570 55.9 1.7e-40 163.7
Csa03g02486 . 36 159 SBP-box Gene Family AT5G50570 59.5 4.6e-38 155.6
Csa04g02750 . 1 1032 SBP-box Gene Family AT1G20980 50.5 8.7e-263 903.7
Csa04g02750 . 1 693 SBP-box Gene Family AT1G76580 50.8 4.3e-165 578.6
Csa01g00620 . 121 279 SBP-box Gene Family AT1G69170 54.1 1.7e-41 167.2
Csa03g02851 . 181 1014 SBP-box Gene Family AT2G47070 55.5 1.3e-239 826.2
Csa01g00620 . 121 279 SBP-box Gene Family AT1G69170 54.1 1.7e-41 167.2
Csa03g02851 . 25 1014 SBP-box Gene Family AT3G60030 54.5 8.6e-278 953.4
Csa06g00818 . 15 163 SBP-box Gene Family AT5G50570 55.9 1.7e-40 163.7
Csa03g02486 . 36 159 SBP-box Gene Family AT5G50570 59.5 4.6e-38 155.6
Csa06g00818 . 15 163 SBP-box Gene Family AT5G50670 55.9 1.7e-40 163.7
Csa03g02486 . 36 159 SBP-box Gene Family AT5G50670 59.5 4.6e-38 155.6
Csa04g02750 . 1 1032 SBP-box Gene Family AT1G20980 50.5 8.7e-263 903.7
Csa04g02750 . 1 693 SBP-box Gene Family AT1G76580 50.8 4.3e-165 578.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31949 PF03110 SBP 7.40E-29 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g00818 Csa_Chr06 FPKM 2.955362 2.427268 27.876335 31.32527 98.650101 87.74968 93.345566 16.205669 15.569054 16.540949