Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00820 ATGGGAAGAGGGAGAGTAGAACTGAAGAGAATAGAGAACAAGATCAATAGACAAGTGACATTCGCTAAACGAAGAAATGGTCTATTGAAGAAAGCATATGAACTTTCAGTTCTATGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAATAGAGGCAAACTCTATGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACTCTAGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCCAATGTCTCCACAAGAGAAGCCTTGGAACTGAGCAGCCAGCAGGAGTATTTGAAACTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAAAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAACTTGATATGTCACTCAAGCAAATCAGATCAACAAGGACTCAGTATATGTTAGATCAGCTCACTGATCTTCAACGTAAGGAACATCTTCTTAATGAAGCAAACAAGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCTCTTCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAGCAAGCTCAGCCACCTGGTGATGCCTTCTTCCATCCTCTAGATTGTGAACCCACCCTACAAATTGGGTATCAACCAGATCCCATAACAGTGGTCACTGCTGGGCCAAGCATGAATAATTTCCTGCCAGGATGGTTGCCTTGA 729 42.39 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLVEGYQVNALQLNQSADDMMYGRQQAQPPGDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGWLP* 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6576874 6583289 + CsaV3_6G008200.1 Csa06g00820 532447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00820 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Csa06g00820 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa06g00820 242 Coils Coil 126 146 - -
Csa06g00820 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Csa06g00820 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Csa06g00820 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 229 - -
Csa06g00820 242 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa06g00820 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 229 - -
Csa06g00820 242 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Csa06g00820 242 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Csa06g00820 242 Coils Coil 152 172 - -
Csa06g00820 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Csa06g00820 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Csa06g00820 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa06g00820 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa06g00820 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g01662 Csa-Chr3:12441805 Csa06g00820 Csa-Chr6:6576874 4.58E-55 dispersed
Csa04g01009 Csa-Chr4:7881189 Csa06g00820 Csa-Chr6:6576874 8.03E-111 dispersed
Csa05g03212 Csa-Chr5:31702786 Csa06g00820 Csa-Chr6:6576874 8.47E-41 dispersed
Csa06g00601 Csa-Chr6:5099335 Csa06g00820 Csa-Chr6:6576874 1.63E-74 dispersed
Csa06g00820 Csa-Chr6:6576874 Csa06g02092 Csa-Chr6:18659488 7.91E-76 dispersed
Csa06g00820 Csa-Chr6:6576874 Csa06g00821 Csa-Chr6:6588388 8.02E-30 tandem
Csa01g00975 Csa-Chr1:6027236 Csa06g00820 Csa-Chr6:6576874 2.57E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31950 PF01486 K-box 2.90E-26 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00820 - - csv:101216798 483.026