Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00825 ATGATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACACGTTGGCTGAAGCCTCCAGAAGTGCTTTTTATTTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGCAGAGATGGTCATAGCTGGAGGAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCTGTCATGTGACCACATTGTTCTTGTACACTACAGAGACATCAATGAGGGAAGGTCCGGGACGGAAAGTGTTCCACATTTGTCTCCAGCATCAGTTTCTACTTCCGGTTCCTGTTCATCCCAAAATCTTGCTTCAGAATATCAACAGACTTCATTGAGCCCAGGGTCTGTAGAAGTTACATCTGACACTGGCAACCATACTATTGAGTCAAATGGCGTGGATGGGCATTTTGAAATATCAGAAATAAAAGGTTCAAACGAACGTGATGTTTCTCAAGCGTTGAGAAGGATTGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATTGGTTCATTTTATGGTCAGGACGAAGATTCAAATTCTAACCTTATAGACTTCTATGAGATGTCCAATGAGGATCAGGTTTCAGTGCTTCAGCATCAAGAAAATGCTATCCATGATAATAATTATACATCGTTTATGATGCAAGATGCTGATGGAAAACATCAACATTACAATATGGCACACGAGTTTATATTCAGTGGTGAAGGAACTCAACCATGGGGTGGTGCACTTGATTCAAGTAAGACAGCCGTTCTTGAGTCTCATGATCGACATTCTCTCCTATGGAATGAAAAAGAAAACCCATCATCATCTTCTACTGTTGACAATGAACATTGCAACTGGCTGGACAGCAGAGGAAAAGCTTTTCCTATGCTTGGAAGCTGCACATCGACAGAGTATTCTTCACCACTAGACACTCATGATACTAATTCCAACTATAACATACCATTTCTTAAACAAGAACATGGAAATTCTTTTGAAGTCGATACCAGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCGCGAAATAGTACCTGAGCAGGGTTATGCCACTGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTATGTGATCCTTTAGAATCTCCATGGGCTTGTATGTTTGGAGACATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGGTACTTTGTTGCAAAGCACCTCCACACCTTCCTGGGAAGGTTGCTTTCTGCATTACATCGGGCAATCGGGAACCCTGCAGTGAAGTCAGAGAGTTCGAATATAAAATGAATGTTTGCAGTCATTGCCAGTCTCATTCAACTGGAGCTGCAAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATTGATGCAGAAATCTGACAGGTTAGATACTGGATTTAGGAGCAATAGTCTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCTCTTCTAGTTGGTAGTGAAACTCCTTCTAGTACCACCGATTGGCTTTTTCAAGAATTGCTAAAAGACAAGTTGCTACTTTGGCTTTCTTCACAACAGAAAAATAGGCATGATTTAACAGACTGTCTTTTGTCCAAGAAAGAACAAGGCGTTATACACATGATAGCTGGCTTGGGCTATGTGTGGGCACTTAACCCAATTCTCAGGTGTGGAGTAAATATAAATTTCCGTGACATTAACGGGTGGACTGCTCTACACTGGGCAGCACGCTTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGGAGCATCAGCTGGCGCCGTGACTGATCCTAGTTCACAAAATCCAGATGGTAAAACTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAAGTTGCACTTACTAGTCATCTCTCATCCCTCACACTTGAAGAAAGTGAGCTTTCCAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACAGTCAGTTGCATTTCAAATGGGAATCTATCTTCCGCTGAGGACTATATCCCTCTAAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCAGCCCGTATTCAATCTGCTTTCCGTGCCCATTCTTTCAGGAAGCGACAGCAGAAAGAGGCAGCCTTTGCAGCTTGTATAGATGAGTATGGAATCGATCCAAATGACATACAGGGGCTCTTCGCTATGTCAAAAATGAATTTTTCTAATCGGCGTGATTACAATGCAGCAGCGTTATCCATTCAAAAGAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTTTTATCACTACGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTCGATAAAGTTGTATTACGTTGGAGAAGGAAAGGAGTTGGCTTGAGAGGGTTCCGTAGTGAGATAGGATCCATTGATGAAAGTGAGGACGATGATATTTTAAAGGTGTTCCGCAAACAAAAAGTGGAAGGAAACATTGATGAGGCTGTTTCACGAGTGCTATCCATGGTTGATTCTCCGGATGCTCGTCAACAATATCATCGTATGGTTGAAGGATTTCGAGAAGCCAAGGCTGAACTCGATGGTGCAAGTAACAAATCAGCAGCATCGACCTCTCTCACCGATATTTCAGGAATGGAAGATTGTAATCAATATCCTAAGTTTATATAG 2889 41.99 MMNAGYDINDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDLSCDHIVLVHYRDINEGRSGTESVPHLSPASVSTSGSCSSQNLASEYQQTSLSPGSVEVTSDTGNHTIESNGVDGHFEISEIKGSNERDVSQALRRIEEQLSLNEDSLKDIGSFYGQDEDSNSNLIDFYEMSNEDQVSVLQHQENAIHDNNYTSFMMQDADGKHQHYNMAHEFIFSGEGTQPWGGALDSSKTAVLESHDRHSLLWNEKENPSSSSTVDNEHCNWLDSRGKAFPMLGSCTSTEYSSPLDTHDTNSNYNIPFLKQEHGNSFEVDTSLIVAQVQKFTIREIVPEQGYATESTKVIIIGSFLCDPLESPWACMFGDIEVPLQIVQNGVLCCKAPPHLPGKVAFCITSGNREPCSEVREFEYKMNVCSHCQSHSTGAAKSPEELLLLVRLVQLLLSDSLMQKSDRLDTGFRSNSLKAGDDQWSSLIEALLVGSETPSSTTDWLFQELLKDKLLLWLSSQQKNRHDLTDCLLSKKEQGVIHMIAGLGYVWALNPILRCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQNPDGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTLEESELSKGSAEVEAEMTVSCISNGNLSSAEDYIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIQGLFAMSKMNFSNRRDYNAAALSIQKKYRGWKGRKEFLSLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEIGSIDESEDDDILKVFRKQKVEGNIDEAVSRVLSMVDSPDARQQYHRMVEGFREAKAELDGASNKSAASTSLTDISGMEDCNQYPKFI* 963
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6629031 6640499 + CsaV3_6G008250.1 Csa06g00825 532452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00825 962 Gene3D - 801 848 - -
Csa06g00825 962 MobiDBLite consensus disorder prediction 133 174 - -
Csa06g00825 962 Pfam Ankyrin repeats (3 copies) 602 685 IPR002110 GO:0005515
Csa06g00825 962 ProSiteProfiles IQ motif profile. 744 772 IPR000048 GO:0005515
Csa06g00825 962 Gene3D - 563 695 IPR036770 -
Csa06g00825 962 SUPERFAMILY Ankyrin repeat 580 687 IPR036770 -
Csa06g00825 962 ProSiteProfiles Ankyrin repeat region circular profile. 626 652 - -
Csa06g00825 962 ProSiteProfiles IQ motif profile. 801 830 IPR000048 GO:0005515
Csa06g00825 962 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 2 948 - -
Csa06g00825 962 SUPERFAMILY E set domains 398 481 IPR014756 -
Csa06g00825 962 Pfam IPT/TIG domain 398 475 IPR002909 -
Csa06g00825 962 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677
Csa06g00825 962 SMART iq_5 800 822 IPR000048 GO:0005515
Csa06g00825 962 SMART iq_5 823 845 IPR000048 GO:0005515
Csa06g00825 962 SMART iq_5 743 765 IPR000048 GO:0005515
Csa06g00825 962 Pfam IQ calmodulin-binding motif 803 821 IPR000048 GO:0005515
Csa06g00825 962 Pfam IQ calmodulin-binding motif 826 845 IPR000048 GO:0005515
Csa06g00825 962 ProSiteProfiles IQ motif profile. 824 848 IPR000048 GO:0005515
Csa06g00825 962 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 2 948 - -
Csa06g00825 962 SMART CG_1_2 11 129 IPR005559 GO:0003677
Csa06g00825 962 Pfam CG-1 domain 14 127 IPR005559 GO:0003677
Csa06g00825 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 746 852 IPR027417 -
Csa06g00825 962 MobiDBLite consensus disorder prediction 135 174 - -
Csa06g00825 962 CDD IPT 398 482 - -
Csa06g00825 962 SMART ANK_2a 626 655 IPR002110 GO:0005515
Csa06g00825 962 Gene3D Immunoglobulins 392 485 IPR013783 -
Csa06g00825 962 ProSiteProfiles Ankyrin repeat profile. 626 658 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00825 K21596 CAMTA; calmodulin-binding transcription activator - csv:101222798 1875.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00825 Csa-Chr6:6629031 Csa07g00551 Csa-Chr7:4030504 4.28E-45 dispersed
Csa06g00825 Csa-Chr6:6629031 Csa06g00984 Csa-Chr6:7994028 5.48E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g00551 . 1 1092 CAMTA Transcription Factor Family AT5G64220 53.4 2.6e-275 945.3
Csa06g00825 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.3 3.2e-254 875.2
Csa06g01752 . 34 906 CAMTA Transcription Factor Family AT3G16940 54.2 8.7e-258 886.7
Csa06g01752 . 11 628 CAMTA Transcription Factor Family AT4G16150 53.5 4.2e-192 668.7
Csa07g00551 . 1 1092 CAMTA Transcription Factor Family AT5G64220 53.4 2.6e-275 945.3
Csa06g00825 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.3 3.2e-254 875.2
Csa06g01752 . 11 628 CAMTA Transcription Factor Family AT4G16150 53.5 4.2e-192 668.7
Csa06g01752 . 34 906 CAMTA Transcription Factor Family AT3G16940 54.2 8.7e-258 886.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31952 PF03859 CG-1 2.50E-47 No_clan Csa TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g00825 Csa_Chr06 FPKM 6.629412 5.741451 8.341756 8.141229 8.553266 9.66711 8.30932 15.060416 17.76033 16.503286