Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00827 ATGAACTGGTTCATTAATGGTGGAGTTATGGAAACTAAGGCCGGTTTGCTTGGTGGGGGTGGGAAGATATGGCTTCAATTATGGGAAACTGTCATTGGGAATTGTTGCAAGATGTATCACCAATATTATCAGTATATTGGATCCAAGAAAGTTAAAAAGACATGGTGGAGAAGACTTTTGGTGGCTTGGGTTCTTAGCTCTATTCTTGCCTCCTTATGGATCTTTCATTACATGAGCTCTCAAGCTACAGAGAAGAGAAAAGAAGCTTTGGGAAGTATGTGTGATGAGAGAGCTAGGATGCTTCAAGATCAGTTTAATGTTAGTATGAATCATATTCAAGCAATGTCCATTCTCATCTCCACCTTTCATCATGGCAAGAACCCATCTGCTATAGATCAGAGGACCTTTGCGAGGTACACGGAAAGAACTGCTTTTGAGAGGCCTCTTACGAGTGGTGTGGCATATGCAGTAAGGGTGCTTCATTCTGACAGAGAACGTTTTGAGAAGCAACAAGGCTGGACAATTAAAAGGATGGACAAAATCGAACAAAGTCCAGTTCATGAAGATGACTATGCTCCAGAAGATCTGGAGCCATCACCCACCCAAGACGAATATGCTCCTGTAATCTTTGCACAGGATACAATTTCTCATGTCGTTTCTCTTGATATGCTGTCAGGAGTGGAAGACCGTAATAATGTATTACGTGCTAGAGCATCAGGAAAGGGAGTCTTAACTGCTCCATTCAAGTTAATCAAAACAAATCGTCTTGGGGTTATCCTTACATTTGCAGTCTACAAAAGAGATCTTCCATCAAATGCCACCCCAAATGAGAGGATTCAAGCTACAGATGGGTATCTTGGCGGAGTTTTTGATATTGAGTCACTGGTGGAGAAGTTACTTCAACAACTTGCAAGCAACCAAACTATCCTAGTGAATGTTTATGATACCACTAACCAATCACATCCAATCAGTATGTATGGTAAAGATGTATCAGAAGATGGGTTGCAGCATGTTAGTCCCCTGAACTTTGGGGATCCAGATAGGAAACATGAGATGCGATGCAGATTCAAACAAAAACAACCCTGGCCTTGGTTGGCAATGACAACTTCAATTGGCATACTCATTATTGCCTTGCTTTTGGGGTATATATTCCATGCAACCTTGAACCGAATTGCCAAAGTGGAGGATGATTATCATGAGATGATGGTACTCAAGAAACGGGCAGAAGATGCCGATATTGCCAAATCCCAGTTCCTTGCAACTGTTTCCCATGAGATCAGAACTCCTATGAATGGTGTTCTAGGAATGTTGCATTTGCTTATGGACACAGATTTAGATGTGACTCAACAAGATTATGTTAAAACTGCACAAGACAGTGGAAAAGCTTTGGTGTCATTGATAAACGAGGTTCTGGATCAGGCAAAAATCGAATCTGGAAAGCTTGAACTTGAAGCTATACCTTTCAATCTCCGAGCAGATTTGGATGATATTTTATCACTCTTTTCTGGGAAATCTCAAGAAAAAGGATTGGAGCTGGCAGTTTACGTTTCAGATAGTGTTCCTGAGACGCTTGTTGGTGATCCTGGAAGGTTTAGGCAAATCATCACTAATCTTGTGGGAAACTCGATCAAGTTCACAGAAAAAGGACACATATTTGTCACTGTTAATCTTGTCAAGGAGGTTATTGAATCGATTGATCTTGAGATCGAGTCATCAAAAAATAGCACCTTGAGTGGTTATCCTGTTGCCAATAGACGCCTCAGCTGGGCAGGGTTTCGAACGTTCAGTCAAGAGGGATCGACTGCTTGTCATTTCATGACATCTCCACCAGACCTTATTAACCTCATGGTATCTGTAGAAGATACGGGTGTTGGTATTCCTCTAGAAGCCCAATCACGCATTTTCACTCCCTTCATGCAGGTTCGACCATCCATCTCTAGAACTCATGGGGGAACGGGTATCGGGCTGAGTATTAGTAAATGTTTGGTTGGCCTCATGAAGGGGGAGATTGGTTTTGTGAGTGTACCTAAGATTGGCTCTACCTTCACATTCACTGCGGTTTTCACAAACTGCTCGAATTCAAGTGAGTATAATAACACACAACAAATTAAGAACACTTCCATCAGTGCAACCTCAGAATTTAAGGGTATGAGAGCCTTAGTTGTGGACCATCAACCCATACGGGCCAAAGTATCGAGATATCACATTCAACGACTTGCAATAAATGTCGAAGTCTTATCAGACTTGAATCAATGTCTATCTACCACAACTATTAGTGGTTCGACTGTCAATATGATTTTTGTTGAGCAGAAACTTTGGGATCAGAATGTGAGCACATCGGATCATTTTATCAAAAACTTGAGAAATTCTTATGCAGTTCCTCCCAAACTATTTCTCCTTACTAGCTCCATTAGTTCTTCAAAAGCTAGCACTACAGTCTCTGATGTATTCACTCCCACTGTCATCTTAAAGCCATTGAGGGCAGGCATGCTTGCTGCCTCTCTACACCGGGTCATGAATGTGGGGATCAAGGGTAACCCTCGCAACGGAGAGCTTCCTGTTCTCTCACTCCGCAATTTACTTCTTGGTCGAAAAATTCTGGTAATAGATGACAATAAGGTGAATCGTATTGTTGCTGCTGGTGCTCTACAGCGATATGGAGCTGATGTGGTATGTGAAAACAGCGGACGAGATGCAATCCAACTGCTTACGCCACCCCATCATTTTGATGCTTGTTTCATGGATATTCAGATGCCAGAAATGGATGGCTTTGAAGCTACAAGAAGAATTCGGGAAATTGAACATCGAATCAATGATGGTATCCAAGTCGGAGAACTATCAAAAGAAGCATACGAGAATACGTGTTATTGGCGTGTACCCATCTTGGCCATGACAGCAGATGTAATCCAGGCTACACATGAGGAATGTCTTCGATGTGGGATGGATGGGTACGTTTCGAAACCATTTGAAGTTGAGCGACTTTACCGAGAAGTTTCTCAATTTTTCCACAGTACCTCAAATGGAACTTTATAG 3033 42.0 MNWFINGGVMETKAGLLGGGGKIWLQLWETVIGNCCKMYHQYYQYIGSKKVKKTWWRRLLVAWVLSSILASLWIFHYMSSQATEKRKEALGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSDRERFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGVEDRNNVLRARASGKGVLTAPFKLIKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSEDGLQHVSPLNFGDPDRKHEMRCRFKQKQPWPWLAMTTSIGILIIALLLGYIFHATLNRIAKVEDDYHEMMVLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQDSGKALVSLINEVLDQAKIESGKLELEAIPFNLRADLDDILSLFSGKSQEKGLELAVYVSDSVPETLVGDPGRFRQIITNLVGNSIKFTEKGHIFVTVNLVKEVIESIDLEIESSKNSTLSGYPVANRRLSWAGFRTFSQEGSTACHFMTSPPDLINLMVSVEDTGVGIPLEAQSRIFTPFMQVRPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSVPKIGSTFTFTAVFTNCSNSSEYNNTQQIKNTSISATSEFKGMRALVVDHQPIRAKVSRYHIQRLAINVEVLSDLNQCLSTTTISGSTVNMIFVEQKLWDQNVSTSDHFIKNLRNSYAVPPKLFLLTSSISSSKASTTVSDVFTPTVILKPLRAGMLAASLHRVMNVGIKGNPRNGELPVLSLRNLLLGRKILVIDDNKVNRIVAAGALQRYGADVVCENSGRDAIQLLTPPHHFDACFMDIQMPEMDGFEATRRIREIEHRINDGIQVGELSKEAYENTCYWRVPILAMTADVIQATHEECLRCGMDGYVSKPFEVERLYREVSQFFHSTSNGTL* 1011
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6644259 6651796 - CsaV3_6G008270.1 Csa06g00827 532454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00827 1010 Gene3D - 864 1007 - -
Csa06g00827 1010 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 526 688 IPR003594 -
Csa06g00827 1010 CDD REC_hyHK_CKI1_RcsC-like 866 998 - -
Csa06g00827 1010 PRINTS Bacterial sensor protein C-terminal signature 615 629 IPR004358 GO:0016310|GO:0016772
Csa06g00827 1010 PRINTS Bacterial sensor protein C-terminal signature 633 643 IPR004358 GO:0016310|GO:0016772
Csa06g00827 1010 PRINTS Bacterial sensor protein C-terminal signature 650 668 IPR004358 GO:0016310|GO:0016772
Csa06g00827 1010 ProSiteProfiles Response regulatory domain profile. 865 1002 IPR001789 GO:0000160
Csa06g00827 1010 ProSiteProfiles Response regulatory domain profile. 718 839 IPR001789 GO:0000160
Csa06g00827 1010 ProSiteProfiles CHASE domain profile. 127 353 IPR006189 -
Csa06g00827 1010 Gene3D - 478 693 IPR036890 -
Csa06g00827 1010 CDD HATPase_EvgS-ArcB-TorS-like 531 688 - -
Csa06g00827 1010 SUPERFAMILY CheY-like 713 840 IPR011006 -
Csa06g00827 1010 SMART HKATPase_4 526 690 IPR003594 -
Csa06g00827 1010 Gene3D CHASE domain 131 360 IPR042240 -
Csa06g00827 1010 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 468 685 IPR036890 -
Csa06g00827 1010 Gene3D - 78 130 - -
Csa06g00827 1010 SMART HisKA_10 414 479 IPR003661 GO:0000155|GO:0007165
Csa06g00827 1010 Pfam His Kinase A (phospho-acceptor) domain 414 479 IPR003661 GO:0000155|GO:0007165
Csa06g00827 1010 Pfam Response regulator receiver domain 866 997 IPR001789 GO:0000160
Csa06g00827 1010 SMART REC_2 864 998 IPR001789 GO:0000160
Csa06g00827 1010 SMART CHASE_2 127 328 IPR006189 -
Csa06g00827 1010 ProSiteProfiles Histidine kinase domain profile. 421 690 IPR005467 -
Csa06g00827 1010 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 400 480 IPR036097 GO:0000155|GO:0007165
Csa06g00827 1010 CDD HisKA 414 475 IPR003661 GO:0000155|GO:0007165
Csa06g00827 1010 SUPERFAMILY CheY-like 863 1002 IPR011006 -
Csa06g00827 1010 Gene3D - 383 477 - -
Csa06g00827 1010 PANTHER TWO-COMPONENT HISTIDINE KINASE 30 1004 - -
Csa06g00827 1010 Pfam CHASE domain 130 326 IPR006189 -
Csa06g00827 1010 PANTHER HISTIDINE KINASE 3 30 1004 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01966 Csa-Chr5:23031938 Csa06g00827 Csa-Chr6:6644259 0 dispersed
Csa06g00827 Csa-Chr6:6644259 Csa06g00945 Csa-Chr6:7589923 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31953 PF03924 CHASE 1.30E-37 CL0165 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00827 K14489 - csv:101216313 1982.61