Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00841 ATGGATTTATCCTTAAGAATGGAAAGCAATGGTTTTGCTGATGTTGTAGAAAGAGAACACATGTTTGATAAAGTTGTTACTCCGAGTGATGTTGGAAAATTAAACCGTTTAGTGATTCCAAAACAACATGCTGAGAAGTACTTCCCTTTAGACTCATCCACCAACGACAAAGGCCTCATCTTAAACTTTGAAGACCGTCATGGAAAGCCTTGGCGTTTTCGTTACTCTTATTGGAATAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGTCGTTTTGTTAAGGAGAAAAAACTCGATGCCGGCGATATCGTTTCTTTCCACCGTGCTCTCCCAAGCCATTCCGTCAACGACCGTCTTTTTATCGACTGGCGTCGTCGTCGCTCCGACGCTCCTACTCCTCATCACCATCACCACCATTTCTCTAACCCTTTTCTCCTCCGTTGGGGCACTACTGCTCGATGGGAAATGGGGATGAGATTGTTGTTAATAATCAAGGATGTTCTTCGATGGGGATTATTAACAAACCTGGGTCTGGTGCCGCAAAACGGTTGA 555 43.78 MDLSLRMESNGFADVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNDKGLILNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRALPSHSVNDRLFIDWRRRRSDAPTPHHHHHHFSNPFLLRWGTTARWEMGMRLLLIIKDVLRWGLLTNLGLVPQNG* 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6759884 6760601 + CsaV3_6G008410.1 Csa06g00841 532468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00841 184 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 141 IPR044800 GO:0003700
Csa06g00841 184 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 12 141 - -
Csa06g00841 184 ProSiteProfiles B3 DNA-binding domain profile. 22 128 IPR003340 GO:0003677
Csa06g00841 184 SUPERFAMILY DNA-binding pseudobarrel domain 19 110 IPR015300 -
Csa06g00841 184 SMART B3_2 22 128 IPR003340 GO:0003677
Csa06g00841 184 CDD B3_DNA 20 109 IPR003340 GO:0003677
Csa06g00841 184 Pfam B3 DNA binding domain 22 127 IPR003340 GO:0003677
Csa06g00841 184 Gene3D - 15 141 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03451 Csa-Chr3:30990269 Csa06g00841 Csa-Chr6:6759884 1.86E-48 dispersed
Csa05g00141 Csa-Chr5:765460 Csa06g00841 Csa-Chr6:6759884 6.74E-66 dispersed
Csa05g02582 Csa-Chr5:27134879 Csa06g00841 Csa-Chr6:6759884 6.83E-48 dispersed
Csa06g00841 Csa-Chr6:6759884 Csa06g03600 Csa-Chr6:29074924 6.13E-16 dispersed
Csa06g00841 Csa-Chr6:6759884 Csa04g00592 Csa-Chr4:3908314 8.46E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31955 PF02362 B3 8.90E-29 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00841 - - csv:101221141 314.694