Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00898 ATGACATTGAATAGCCAAATTGAAAGCCTATGGCTTTTAGCTTTGGCTTCAAAATGCTCATCTCTCACCGAACAAAACTTCCTTTTCTCTTCACTCCTCCTCCTCCTTATTTCCTTTCTCCTCTCCATTTTCTATTGGGCCCATCCCGGCGGCCCAGCTTGGGGCCGCCGCCGCCGCTCCTCCGCCCTCATCCCTGGCCCAAGAGGCTTCCCAGTCATCGGTAGTATGAACTTGATGACGGGTCTGGCTCACCAAAAAATTGCCTCCGTAGCCAAGTCCTTACAAGCTACTCGTCTCATGGCTTTTTCCCTTGCCAACACTCGAGTGATTGTCACCTGCCATCCCGACGTAGCCAAAGACATCCTCAATAGCTCCGTCTTTGCTGACCGCCCGATCAAAGAATCGGCTTACTCCTTGATGTTCAATCGTGCCATTGGATTCGCTCCTTACGGCGTTTATTGGCGAACCCTCCGTCGGATTGCTTCCCAACATCTCTTCTCTCCTAAACAAATCAAATCCTCGGAATCACAACGCCGTCAAATCGCTTCCCAATTGGTCAAAATCCTCTCGTCAACTGCCACGTCATCCACCCATCATCGCATTCGTCAAACTCTTAAAACCGCTTCTTTGAATAGCATGATGGGTTCGGTTTTTGGGCGGTTTTATAATCTCTCTGACTCTAATCCTGAAGTTGAGCTACTTCAAAGCCTTGTGGACGAAGGGTATGATTTATTAGGCCTTCTTAATTGGTCTGACCATCTCCCTTTCTTGGGTGATTTCGACCCACAAAGAATCCGATTTAGGTGCTCCCGTTTGGTTCCCAAAGTGAACAACTTCGTCACCCGCATCATCGACGAACATCGTCAAAATTCAAACCGTGAAACTATGGATTTCGTCGATGTTCTTCTCTCTCTTCAACAAAACGAAAATCTCTCTGACTCCGATATCATCTCTGTTCTTTGGGAAATGATATTTAGAGGAACTGACACAGTGGCTGTTTTAATCGAGTGGATTCTAGCGAGGATGGTTGTTCATGAGGATGTGCAAAAGAAAGTAGAAGAGGAATTAGATAACGTGGTTGGAAAATCGCGTGCCGTGATGGAATCAGACATTCCGTCGTTGGTGTATTTAACGGCGGTGGTTAAGGAAGTTCTGAGGTTGCATCCACCAGGCCCACTCCTCTCTTGGGCTCGTATTGCTATTACGGATACAACCATTGATGGGTATCACGTGCCACGTGGGACTACTGCTATGGTAAACATGTGGTCGATAGCCCGGGACCCACAGATCTGGTCGGACCCACTTGAATTTATGCCTGAGAGGTTTCTGTCAGCAGGTCCAGGTGGTGGTGGTGACGTGGAGTTTTCTATCATGGGTTCCGATCTCCGACTAGCTCCATTCGGATCGGGTCGGAGAACTTGTCCTGGAAAAGCACTTGCTTGGACAACCGTCACTTTCTGGGTCGCTACACTTTTACATGAATTTAAATGGTTGCCTTCTCCAAACCAAAACCAAGTTGTCAACTTTGATGAAGTTCTCAAGTTGTCTTGTGAGATGGCAAATCCACTCACCGTTAAACTATGTCCAAGACGTATTTCAAATAATTAA 1608 47.14 MTLNSQIESLWLLALASKCSSLTEQNFLFSSLLLLLISFLLSIFYWAHPGGPAWGRRRRSSALIPGPRGFPVIGSMNLMTGLAHQKIASVAKSLQATRLMAFSLANTRVIVTCHPDVAKDILNSSVFADRPIKESAYSLMFNRAIGFAPYGVYWRTLRRIASQHLFSPKQIKSSESQRRQIASQLVKILSSTATSSTHHRIRQTLKTASLNSMMGSVFGRFYNLSDSNPEVELLQSLVDEGYDLLGLLNWSDHLPFLGDFDPQRIRFRCSRLVPKVNNFVTRIIDEHRQNSNRETMDFVDVLLSLQQNENLSDSDIISVLWEMIFRGTDTVAVLIEWILARMVVHEDVQKKVEEELDNVVGKSRAVMESDIPSLVYLTAVVKEVLRLHPPGPLLSWARIAITDTTIDGYHVPRGTTAMVNMWSIARDPQIWSDPLEFMPERFLSAGPGGGGDVEFSIMGSDLRLAPFGSGRRTCPGKALAWTTVTFWVATLLHEFKWLPSPNQNQVVNFDEVLKLSCEMANPLTVKLCPRRISNN* 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7236157 7238301 + CsaV3_6G008980.1 Csa06g00898 532525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00898 535 SUPERFAMILY Cytochrome P450 64 530 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00898 535 PRINTS E-class P450 group I signature 208 226 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00898 535 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00898 535 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00898 535 PRINTS E-class P450 group I signature 378 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00898 535 PRINTS E-class P450 group I signature 420 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00898 535 PRINTS E-class P450 group I signature 464 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00898 535 PRINTS E-class P450 group I signature 474 497 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00898 535 PANTHER CYTOCHROME P450 78A7-RELATED 4 533 - -
Csa06g00898 535 Gene3D Cytochrome P450 54 529 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00898 535 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 467 476 IPR017972 GO:0005506|GO:0016705
Csa06g00898 535 PANTHER CYTOCHROME P450 78A6 4 533 - -
Csa06g00898 535 Pfam Cytochrome P450 65 510 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00898 535 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00898 535 PRINTS P450 superfamily signature 379 390 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00898 535 PRINTS P450 superfamily signature 465 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g00898 535 PRINTS P450 superfamily signature 474 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02212 Csa-Chr5:24906086 Csa06g00898 Csa-Chr6:7236157 6.46E-173 dispersed
Csa06g00898 Csa-Chr6:7236157 Csa06g03205 Csa-Chr6:27162625 1.99E-85 dispersed
Csa06g00898 Csa-Chr6:7236157 Csa06g02088 Csa-Chr6:18629600 3.52E-177 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00898 K20619 - csv:101216159 1050.81