Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00940 ATGCCAGCTGAAAACTCAATTCCATATGATCGTGATGCAGAGCCCTTTGTTGAGGTCGATCCAACTGGAAGGTTTGGACGATACGATGATCTTCTTGGGTCTGGAGCCGTAAAGAAAGTTTATAGGGCATTTGATCAGGAGGAAGGAATAGAGGTTGCTTGGAATCAAGTTCGATTGAGAAATTTTAGTGGGGATCCAGTGTTCATCAACCGTCTGAGGTCTGAGGTTCAGCTGCTGAGCACTTTGAACAACAAATATATCATCGTTTGTTACAGTGTTTGGAATGATGATGAGCATAATACATTGAATTTTATCACCGAGGTGTGCACATCAGGAAATCTAAGGGATTATCGTAAGAAACATCGACATGTGTCAATTAAGGCCTTGAAAAAATGGTCAAAGCAAGTGCTCGAGGGATTGGATTATCTTCATACTCATGAGCCTTGCATTATTCACAGAGACCTCAATTGCAGTAACATTTTTGTCAATGGGAATATTGGCCAGGTTAAAATAGGCGATCTAGGGTTTGCAGCTATAGTTGGCAGGAGCCATGCTGCACATTCAATCATAGGAACACCCGAGTATATGGCACCAGAGCTGTATGAGGAAGACTACACAGAGATGGTGGATATATACTCCTTTGCAATGTGTTTGCTCGAGATGGTTACTATGGAGATACCATACAGTGAATGCGATAGTGTTGCCAAGATATACAAGAAGGTAACAACTGGAATTAAGCCCCAAGCAATTACCAAAGTAACTGATGCTGAAGTCCGAGCTTTCATTGAGAAGTGCATTGCACAGCCAAGAGCAAGACCATCCGCTTCTGAACTTCTCAAGGATCCCTTCTTCGACGAAGTCAGGGATGAAGATTCTGAACAGACTTCTTAA 891 42.42 MPAENSIPYDRDAEPFVEVDPTGRFGRYDDLLGSGAVKKVYRAFDQEEGIEVAWNQVRLRNFSGDPVFINRLRSEVQLLSTLNNKYIIVCYSVWNDDEHNTLNFITEVCTSGNLRDYRKKHRHVSIKALKKWSKQVLEGLDYLHTHEPCIIHRDLNCSNIFVNGNIGQVKIGDLGFAAIVGRSHAAHSIIGTPEYMAPELYEEDYTEMVDIYSFAMCLLEMVTMEIPYSECDSVAKIYKKVTTGIKPQAITKVTDAEVRAFIEKCIAQPRARPSASELLKDPFFDEVRDEDSEQTS* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7552851 7555939 - CsaV3_6G009400.1 Csa06g00940 532567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00940 296 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK11-RELATED 1 288 - -
Csa06g00940 296 Gene3D Transferase(Phosphotransferase) domain 1 109 290 - -
Csa06g00940 296 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Csa06g00940 296 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00940 296 MobiDBLite consensus disorder prediction 277 296 - -
Csa06g00940 296 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00940 296 MobiDBLite consensus disorder prediction 279 296 - -
Csa06g00940 296 SUPERFAMILY Protein kinase-like (PK-like) 19 285 IPR011009 -
Csa06g00940 296 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 288 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa06g00940 Csa07g00269 CCT
Csa06g00940 Csa07g00269 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00940 Csa-Chr6:7552851 Csa07g01167 Csa-Chr7:11442874 2.89E-113 dispersed
Csa03g00442 Csa-Chr3:3747292 Csa06g00940 Csa-Chr6:7552851 9.30E-163 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78339 PF00069 Pkinase 1.60E-50 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00940 K08867 - csv:101222153 605.905