Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g00941 | ATGCAAGCTTCTCAGCTTCATAGAGGTTCACATATGGCAAAGAGGTTGTGTTATCAGCCACTTCAGGAAGTGGATGCCTACTACTTCTCCCAATTTCAATCTTTAGGTCGCCAATTATATTCCAATGTTGGCAACCAAAGAGGTCACTTCAATGTTCAAGACATCGGTGATCGGTACTGCACTCTGGAGTCGTCCTCAGGAAGCCACGGCTATGCAACTCACAACTCGACCTCAACTGTCACTTTCTCACCAAATGGGAGTCCAGTATCGCAACAGGATTATCGTTCAAATCCTTCTGATCAGCATAATTCCCCTGACAATACGTATGGTTCCTCAGTAAGTGGATCCAGTATAACGGATGATATTAGTGATTTTAGGCACAAACTACTGGAATTGGAAACTGTGATGCTTGGTCCTGATTCTGATGTTATATATAGTTTTGATAGTATCTACCAGGAGGGGACGGACAATCCAGAGATGGGAACTTGGGGACAAGTGATGGATGCTATTACTAAAGGAAACTTGAAAAAGATCCTAATAGCTTGTGCTAAAGCTGTATCAGATAATGATGCATTGATGGCACAATGGCTTATGGATGAGCTGCGCAAGATGGTGTCAGTTTGTGGCGAACCGATGCAGAGGTTAGGAGCGTATATGCTGGAGGGGTTGGTTGCACGGTTGGCTTCCTCAGGTAGTTGCATCTATAAATCTTTGAGATGCAAGGAACCAGCAAGAGCCGAGCTCCTCTCGTATATGCACCTTCTTTATGAGGTTTGCCCATACTTCAAATTTGGATACATGTCAGCAAATGGTGCCATTGCAGAAGCCATGAAAGATGAAGATAGAGTTCACATCATTGATTTCCAAATTTCTCAGGGTACTCAGTGGGTCACTTTGATTCAAGCATTTGCAGGTAGGCCTGGTGGGCCACCTCACATTCGTATAACTGGTATAGATGATCCTGCATCAGCTTATGCTCGTGGAGGTGGCCTAGATATTGTTGGGAAGAGACTTTCCAAGTTAGCAAAGTTATTTAACGTGCCATTTGAGTTTCACTCTGCTTCCATTTCTGGCTGCAATGTTCATCAAAACAATCTCGGCATTCGACGAGGGGAGGCTTTAGCAGTGAATTTTGCATTCATGCTACACCATATGCCAGATGAGAGTGTAAGCACCGAAAATCATCGAGATAGGCTACTGAGGCTGGTTAAAAGTCTGTCTCCAAAGGTCGTGACACTTGTTGAACAAGAATCCAACACAAACACGGCTGCCTTCTTTCCCCGGTTCGTCGAGACACTAGATTACTACAATGCCATGTTTGAATCAATCGATGTTACTCTTCCAAGACAGCACAAGGAGCGAATTAACATCGAGCAGCATTGTCTAGCCAGGGAAGTTGTCAACATACTAGCATGTGAAGGAGCAGAGAGAGTGGAACGACACGAGCTACTTGGAAAGTGGAGACTGCGATTTGGATTGGCAGGATTTACACCTTACCCGTTAAGCTCGTTGGTGAATGCTACCATCAAAACGTTATTAGATAACTATTCTAACAGGTATAGACTCGAAGAAAGAGAAGGGGCTTTGTATTTAGGGTGGATGGATAGGGATTTAGTTGCTTCCTGTGCATGGAAGTAA | 1638 | 44.14 | MQASQLHRGSHMAKRLCYQPLQEVDAYYFSQFQSLGRQLYSNVGNQRGHFNVQDIGDRYCTLESSSGSHGYATHNSTSTVTFSPNGSPVSQQDYRSNPSDQHNSPDNTYGSSVSGSSITDDISDFRHKLLELETVMLGPDSDVIYSFDSIYQEGTDNPEMGTWGQVMDAITKGNLKKILIACAKAVSDNDALMAQWLMDELRKMVSVCGEPMQRLGAYMLEGLVARLASSGSCIYKSLRCKEPARAELLSYMHLLYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGTQWVTLIQAFAGRPGGPPHIRITGIDDPASAYARGGGLDIVGKRLSKLAKLFNVPFEFHSASISGCNVHQNNLGIRRGEALAVNFAFMLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFVETLDYYNAMFESIDVTLPRQHKERINIEQHCLAREVVNILACEGAERVERHELLGKWRLRFGLAGFTPYPLSSLVNATIKTLLDNYSNRYRLEEREGALYLGWMDRDLVASCAWK* | 546 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 7561913 | 7565476 | - | CsaV3_6G009410.1 | Csa06g00941 | 532568 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g00941 | 545 | MobiDBLite | consensus disorder prediction | 66 | 116 | - | - | |
Csa06g00941 | 545 | Pfam | GRAS domain family | 175 | 545 | IPR005202 | - | |
Csa06g00941 | 545 | PANTHER | OSJNBA0084A10.13 PROTEIN-RELATED | 18 | 545 | IPR005202 | - | |
Csa06g00941 | 545 | ProSiteProfiles | GRAS family profile. | 166 | 545 | IPR005202 | - | |
Csa06g00941 | 545 | PANTHER | SCARECROW-LIKE TRANSCRIPTION FACTOR PAT1 | 18 | 545 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03178 | Csa-Chr3:29394049 | Csa06g00941 | Csa-Chr6:7561913 | 5.39E-74 | dispersed | |
Csa06g01475 | Csa-Chr6:12522104 | Csa06g00941 | Csa-Chr6:7561913 | 3.35E-22 | dispersed | |
Csa01g00085 | Csa-Chr1:522750 | Csa06g00941 | Csa-Chr6:7561913 | 7.22E-58 | transposed | |
Csa01g02098 | Csa-Chr1:18212758 | Csa06g00941 | Csa-Chr6:7561913 | 1.71E-65 | transposed | |
Csa02g01459 | Csa-Chr2:14029729 | Csa06g00941 | Csa-Chr6:7561913 | 2.57E-52 | transposed | |
Csa02g02578 | Csa-Chr2:22508174 | Csa06g00941 | Csa-Chr6:7561913 | 2.64E-87 | transposed | |
Csa03g00280 | Csa-Chr3:2263515 | Csa06g00941 | Csa-Chr6:7561913 | 4.11E-35 | transposed | |
Csa03g02085 | Csa-Chr3:17145897 | Csa06g00941 | Csa-Chr6:7561913 | 1.85E-66 | transposed | |
Csa03g02273 | Csa-Chr3:20205425 | Csa06g00941 | Csa-Chr6:7561913 | 1.90E-175 | transposed | |
Csa04g00507 | Csa-Chr4:3311850 | Csa06g00941 | Csa-Chr6:7561913 | 1.61E-58 | transposed | |
Csa05g00112 | Csa-Chr5:556639 | Csa06g00941 | Csa-Chr6:7561913 | 3.13E-79 | transposed | |
Csa05g01594 | Csa-Chr5:18792392 | Csa06g00941 | Csa-Chr6:7561913 | 3.86E-67 | transposed | |
Csa05g02016 | Csa-Chr5:23548902 | Csa06g00941 | Csa-Chr6:7561913 | 3.33E-67 | transposed | |
Csa05g02830 | Csa-Chr5:28763181 | Csa06g00941 | Csa-Chr6:7561913 | 7.17E-67 | transposed | |
Csa06g03008 | Csa-Chr6:25935402 | Csa06g00941 | Csa-Chr6:7561913 | 4.13E-44 | transposed | |
Csa06g03022 | Csa-Chr6:26029860 | Csa06g00941 | Csa-Chr6:7561913 | 8.86E-58 | transposed | |
Csa06g03233 | Csa-Chr6:27323359 | Csa06g00941 | Csa-Chr6:7561913 | 9.78E-59 | transposed | |
Csa06g03453 | Csa-Chr6:28391622 | Csa06g00941 | Csa-Chr6:7561913 | 0 | transposed | |
Csa07g00389 | Csa-Chr7:2879139 | Csa06g00941 | Csa-Chr6:7561913 | 6.31E-43 | transposed | |
Csa07g01411 | Csa-Chr7:14297157 | Csa06g00941 | Csa-Chr6:7561913 | 4.83E-151 | transposed | |
Csa03g00440 | Csa-Chr3:3721517 | Csa06g00941 | Csa-Chr6:7561913 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31966 | PF03514 | GRAS | 1.80E-135 | CL0063 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g00941 | - | - | csv:101221914 | 1107.43 |