Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00945 ATGTGGAGGGGTTGCTCTGGTGGAGCTGGGGTTTTTCTCAAGCTCTCTAGGTACTTACTGAGGATGTCTTTGAGCTGCAAGTTCTCTAGTGCTAACGGGAAATTTCCAGCTGGATTTAAGCTGAAGAAGGCTAAGGAACATCTGGGTTTGTTAAATTCTACCGGGAAATGGAAGAAGAAGCTTCTCTGTCATCGGATTTTTGTTCTAATTATCGTTTTGAGCAGTTGGTTTTCCTTTCGTTGGTATAATGTGAATAATGGAACTAAACAGAAGGCCTCGAACTTGTTCGACGAAGAAACTCGAACTTTGCTGCGGCATTTTAATGTAAGCAAGAATCAGCTTCAAGCTTTAGCTTCCTTGTTATCTGACTCAGATCGAATGTCATCCATTGGTTGCACCAATGATTTTGGATCCGACACATCACAGTTGAATGGAATTGCCTGTGCCCTAAGGTTACTGTACTGGGAACAAGGTTTGCACAAAGAATATGTATGGGCTGAAGGAAGTGAAGATTCCAATGTTGGGGAGTGCCCAATCCCAACTAAGAAGATCACTGAAAATTCCAGCCAATTATTCTCTGATAACATAACTGTTCCATTTGCTACAAATTTATCCGTCTCTTTACTCTCTACTGGAAATCAGCTTTGTAGAAAGATAACTGAACAGGCAGGAGTGCTAAGTTGCCTTTTAAGAAAGCACTTGAAGAATTTCTCTAGTTTGTTGATTGGATGTTTTTGCGTTCTCCTTGAAGTGATAGTGTTCCAGAAAATATCTGGTTTCCATCTAAAATTGTGGAACAAGAAACATCCAAAGTCAAATCAGCCATTGGATCATCAACAGTGGGTCTTACTACGAAGAAAGCAACATCAACAAGTCAAAGAGTCTCCTAAAGGAGCTGGGAAATGGCGGAAGGTGCTTCTAAGAATATTTATTGTAGTTGGAATCGTTGGGTCCGTTTGGTTGTTTCGGTACCTGAACAAGACAGCCATTTTGAGAAGAGAAGAAACCCTTGCAAATATGTGTGATGAGCGAGCCCGGATGTTGCAGGACCAATTTAATGTTAGCATGAACCATGTTCATGCATTGGCCGTTCTTACCTCTACCTTCCACCATGGAAAACAGCCCTCTGCCATTGATCAGAAAACATTTGGTGAGTATACAGAAAGAACAGCCTTTGAAAGACCACTGACTAGTGGTGTAGCTTATGCTTTGAAAGTTAATCACTCAGAAAGGGAGCATTTTGAGGTGATGCATGGATGGACAATAAAGAAAATGGAGACAGAGGACCAAACTCTTGTTCAAGATTGTAATCCAGAAAATTTGGAACCTGCACCAATTCGAGATGAATATGCACCTGTCATATTTTCTCAAGAAACAGTAGCTCATATAGTTTCTATCGACATGATGTCTGGAAAAGAAGATCGTGAGAACATCTTGCGAGCTAGGGCTTCTGGAAAGGGTGTGCTGACATCTCCTTTTAAACTTTTGAAATCTAATCACCTTGGAGTGGTCCTCACATTTGCTGTCTATAGCACTGACCTCCCACTAGATGCTACTCCTGAGCAGCGTATTGAAGCTACTGTTGGCTATCTAGGTGCCTCATATGATATCCCCTCACTGGTGGAAAAGCTTCTGCATCAGCTTGCTAGCAAGCAGACAATTGTTGTGAATGTATATGATACAACCAATGAATCTGCTCCCATTAACATGTATGGTTCTGATTTTACCGATACTGGGCTACTTCATATTAGTAAACTTGATTTTGGGGATCCTTTGAGAAGGCATGAGATGCATTGTAGATTCAAGCATAAACCTCCACCTCCTTGGACAGCTATCAATTCATCTGTAGGCGTCCTAATCATTACATTGCTGGTTGGCCATATTTTTCATGCAGCTATAAGTCGGATTGCAAAAGTGGAGAATGATTATCACAAGATGATGGATCTTAAAAGCCTTGCCGAAGCTGCTGATGTGGCAAAATCACAGTTTCTGGCAACAGTATCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGCATGCTAAAATTACTGATGGACACTAACCTTGATTCAAAACAACTGGATTTTGCCCAAACTGCCCACGAGAGCGGAAAAGATTTGATATCGCTCATAAATAAGGTTCTTGATCAAGCTAAGATAGAGTCAGGAAGTCTTGAACTTGAATCTGTACCCTTTGATCTGCGTGATATAGTTGATAAAGTGGTCTCACCTTTTTCACTTAAATCCAACGAAAAGGGAATTGAGTTGGCTGTTTATGTTTCTGACTTGGTGCCTGAAGTTGTCATTGGTGACCACGGACGCTTCCGTCAAATAATTACTCATCTTGTTGGAAACTCACTCAAGTTTACTCATAATAAGGGACACATACTAGTCTCAGTGCATCTGGCTGATGAAGTGAGAGCCACAGTTGATTTCATGGACATTGTGCTCAAACAAGGCTCATATATTGTTGGAGATACATCAAACAATAGTTGCACTACATTCAGTGGGTTACCTGTGGTGGATAGATGGAAAAGCTGGGAAGATTTCAAAAAGTTCGGCAGGACAGATGTGGTGGAAGAATCCAAAATGATTAGAATACTCGTGACTGTTGAGGATACAGGTGTAGGGATTCCCCAAAATGCACAAAGCCGAATTTTCACTCCTTTCATGCAAGCTGATAGTTCCACTTCTCGGACATATGGTGGCACTGGAATAGGATTGAGTATTAGCAAACGTTTGGTGGATCTCATGGATGGGGAGATTGGGTTTGTGAGTGAGCCTGGTATAGGTAGCACATTTTCATTTACGGTATCTTTCCAGAAAGGGGAAACAAGTATTTTGGATACCAGGCAGCCACAGTATGACGTGGGTGTTAGAGAGTTCCAGGGGCTAAGAGCACTAATAATTGATAATAGCTGCATTCGAGCAGAGGTCACAAGATATCATCTGCAGAGGCTGGGGATTTCTGTTGATATAACTCTGAGTGCACAATCTGCTTATCAATACCTATCCAATACCTCCCACACAAGAGCATCAACACAATTGGCCATGATTCTCATAGATAGAGACATTTGGGACAAGAAAATGGGTCTCAAGTTCCATCATTTGTTTAAAGAGCATGTGGATAGAAGTGGGACAGATGTCCAGATGAATGGTCCAAAGCTCTTTGTCTTGGCAACCCCCAAAAGCTCCAATGAGCACAATGAACTTAAATCTTCTGGTCATGTAAATAATGTCTTAAGTAAACCACTTCAGTTAGACGCATTGGTCAGTTGCTTCCGCGAAGCCTTTGGGATTGAGAAGAGGAATCAAGTAATTATTAAAAAACCATCTACTCTTAGGAATCTGCTGAAAGAAAAGCATATTTTGGTTGTTGATGACAATGCAGTAAACATAAGGGTGGCAGAAGGTGCACTCAAAAAATATGGAGCCATTGTAACTTGTGTAAAATGTGGAAAGGATGCTGTGGCTCTCCTCAATCCTCCACATAACTTTGATGCTTGCTTCATGGACCTCCAGATGCCTGAGATGGATGGGTATGAAGCTACAAGACAGGTCCGTGCTGTAGAATGTGGGGTGAATGCGAAAATTACCTCTGGAGAAGTGTCAATTGAGAACAATAAGATCCATTGGCACACACCAATATTTGCTATGACGGCAGATTTAATTCAGGATATGAATGAGGAGTGCCTGAAGTGTGGGATGGATGGTTATGTAGCTAAGCCATTTGAAGAGGAGCAACTTTATTCGGCTGTAGCACGTTTTTTTGAGACTGCTTGA 3786 41.52 MWRGCSGGAGVFLKLSRYLLRMSLSCKFSSANGKFPAGFKLKKAKEHLGLLNSTGKWKKKLLCHRIFVLIIVLSSWFSFRWYNVNNGTKQKASNLFDEETRTLLRHFNVSKNQLQALASLLSDSDRMSSIGCTNDFGSDTSQLNGIACALRLLYWEQGLHKEYVWAEGSEDSNVGECPIPTKKITENSSQLFSDNITVPFATNLSVSLLSTGNQLCRKITEQAGVLSCLLRKHLKNFSSLLIGCFCVLLEVIVFQKISGFHLKLWNKKHPKSNQPLDHQQWVLLRRKQHQQVKESPKGAGKWRKVLLRIFIVVGIVGSVWLFRYLNKTAILRREETLANMCDERARMLQDQFNVSMNHVHALAVLTSTFHHGKQPSAIDQKTFGEYTERTAFERPLTSGVAYALKVNHSEREHFEVMHGWTIKKMETEDQTLVQDCNPENLEPAPIRDEYAPVIFSQETVAHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYSTDLPLDATPEQRIEATVGYLGASYDIPSLVEKLLHQLASKQTIVVNVYDTTNESAPINMYGSDFTDTGLLHISKLDFGDPLRRHEMHCRFKHKPPPPWTAINSSVGVLIITLLVGHIFHAAISRIAKVENDYHKMMDLKSLAEAADVAKSQFLATVSHEIRTPMNGVLGMLKLLMDTNLDSKQLDFAQTAHESGKDLISLINKVLDQAKIESGSLELESVPFDLRDIVDKVVSPFSLKSNEKGIELAVYVSDLVPEVVIGDHGRFRQIITHLVGNSLKFTHNKGHILVSVHLADEVRATVDFMDIVLKQGSYIVGDTSNNSCTTFSGLPVVDRWKSWEDFKKFGRTDVVEESKMIRILVTVEDTGVGIPQNAQSRIFTPFMQADSSTSRTYGGTGIGLSISKRLVDLMDGEIGFVSEPGIGSTFSFTVSFQKGETSILDTRQPQYDVGVREFQGLRALIIDNSCIRAEVTRYHLQRLGISVDITLSAQSAYQYLSNTSHTRASTQLAMILIDRDIWDKKMGLKFHHLFKEHVDRSGTDVQMNGPKLFVLATPKSSNEHNELKSSGHVNNVLSKPLQLDALVSCFREAFGIEKRNQVIIKKPSTLRNLLKEKHILVVDDNAVNIRVAEGALKKYGAIVTCVKCGKDAVALLNPPHNFDACFMDLQMPEMDGYEATRQVRAVECGVNAKITSGEVSIENNKIHWHTPIFAMTADLIQDMNEECLKCGMDGYVAKPFEEEQLYSAVARFFETA* 1262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7589923 7598268 - CsaV3_6G009450.1 Csa06g00945 532572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00945 1261 CDD HATPase_EvgS-ArcB-TorS-like 776 939 - -
Csa06g00945 1261 Pfam CHASE domain 377 571 IPR006189 -
Csa06g00945 1261 ProSiteProfiles CHASE domain profile. 374 598 IPR006189 -
Csa06g00945 1261 Gene3D - 961 1113 - -
Csa06g00945 1261 Pfam His Kinase A (phospho-acceptor) domain 659 724 IPR003661 GO:0000155|GO:0007165
Csa06g00945 1261 ProSiteProfiles Histidine kinase domain profile. 666 943 IPR005467 -
Csa06g00945 1261 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 650 725 IPR036097 GO:0000155|GO:0007165
Csa06g00945 1261 Pfam Response regulator receiver domain 1124 1254 IPR001789 GO:0000160
Csa06g00945 1261 Gene3D CHASE domain 378 605 IPR042240 -
Csa06g00945 1261 SMART HKATPase_4 771 943 IPR003594 -
Csa06g00945 1261 CDD HisKA 659 720 IPR003661 GO:0000155|GO:0007165
Csa06g00945 1261 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 713 939 IPR036890 -
Csa06g00945 1261 CDD REC_hyHK_CKI1_RcsC-like 1124 1254 - -
Csa06g00945 1261 PANTHER TWO-COMPONENT HISTIDINE KINASE 287 1259 - -
Csa06g00945 1261 Gene3D - 1117 1261 - -
Csa06g00945 1261 Gene3D - 628 722 - -
Csa06g00945 1261 PRINTS Bacterial sensor protein C-terminal signature 868 882 IPR004358 GO:0016310|GO:0016772
Csa06g00945 1261 PRINTS Bacterial sensor protein C-terminal signature 886 896 IPR004358 GO:0016310|GO:0016772
Csa06g00945 1261 PRINTS Bacterial sensor protein C-terminal signature 903 921 IPR004358 GO:0016310|GO:0016772
Csa06g00945 1261 PRINTS Bacterial sensor protein C-terminal signature 927 940 IPR004358 GO:0016310|GO:0016772
Csa06g00945 1261 SMART CHASE_2 374 573 IPR006189 -
Csa06g00945 1261 ProSiteProfiles Response regulatory domain profile. 1123 1258 IPR001789 GO:0000160
Csa06g00945 1261 SUPERFAMILY CheY-like 1120 1258 IPR011006 -
Csa06g00945 1261 SMART HisKA_10 659 724 IPR003661 GO:0000155|GO:0007165
Csa06g00945 1261 SUPERFAMILY CheY-like 962 1099 IPR011006 -
Csa06g00945 1261 ProSiteProfiles Response regulatory domain profile. 967 1099 IPR001789 GO:0000160
Csa06g00945 1261 Gene3D - 84 126 - -
Csa06g00945 1261 Gene3D - 325 377 - -
Csa06g00945 1261 SMART REC_2 1122 1254 IPR001789 GO:0000160
Csa06g00945 1261 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 771 941 IPR003594 -
Csa06g00945 1261 Gene3D - 723 946 IPR036890 -
Csa06g00945 1261 PANTHER HISTIDINE KINASE 2 287 1259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00827 Csa-Chr6:6644259 Csa06g00945 Csa-Chr6:7589923 0 dispersed
Csa06g00945 Csa-Chr6:7589923 Csa07g01871 Csa-Chr7:18725770 8.97E-27 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31967 PF03924 CHASE 7.10E-35 CL0165 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00945 K14489 - csv:101221294 2508.41