Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g00967 | ATGGCGGATTCAGATAACGAATCGGGAGGTCACAACAGCAACGCCAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCATTACCAGCAAACGCAAAAATCTCAAAAGATGCAAAAGAAACAGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACAGGGGAAGCATCGGACAAGTGCCAAAGAGAGAAAAGGAAGACAATCAACGGCGATGATTTACTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCGCTGAAGACTTATCTTCAAAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGTGGAGGAGTCAACTCTTCTGGTGCTGCCGCTGGTGGCGCCGGTGGTGGATACAACGGAGTGGGTGGAATGTATGGTGGGGTAATGATGATGGGTCACCATCAGGGAGGCGTTTATGGTGGTGCTGGATTTCATCATATGGGAATCGGCAGCGGGAAAGGAGGAAGTGGTGGTGCTTCCGGCACCGGACACCGGTAG | 606 | 52.64 | MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGGGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGFHHMGIGSGKGGSGGASGTGHR* | 202 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 7816316 | 7818313 | + | CsaV3_6G009670.1 | Csa06g00967 | 532594 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g00967 | 201 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Csa06g00967 | 201 | MobiDBLite | consensus disorder prediction | 114 | 140 | - | - | |
Csa06g00967 | 201 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 27 | 91 | IPR003958 | - | |
Csa06g00967 | 201 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 175 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Csa06g00967 | 201 | SUPERFAMILY | Histone-fold | 24 | 126 | IPR009072 | GO:0046982 | |
Csa06g00967 | 201 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Csa06g00967 | 201 | Gene3D | Histone, subunit A | 15 | 132 | IPR009072 | GO:0046982 | |
Csa06g00967 | 201 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 | 1 | 175 | - | - | |
Csa06g00967 | 201 | PRINTS | CCAAT-binding transcription factor subunit A signature | 55 | 73 | - | - | |
Csa06g00967 | 201 | PRINTS | CCAAT-binding transcription factor subunit A signature | 74 | 92 | - | - | |
Csa06g00967 | 201 | PRINTS | CCAAT-binding transcription factor subunit A signature | 93 | 111 | - | - | |
Csa06g00967 | 201 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 58 | 74 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa06g00967 | Csa07g00248 | CCT | |
Csa06g00967 | Csa07g00248 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g03243 | Csa-Chr3:29752680 | Csa06g00967 | Csa-Chr6:7816316 | 2.66E-62 | dispersed | |
Csa05g00631 | Csa-Chr5:4179690 | Csa06g00967 | Csa-Chr6:7816316 | 2.02E-60 | dispersed | |
Csa03g00408 | Csa-Chr3:3477057 | Csa06g00967 | Csa-Chr6:7816316 | 1.94E-63 | transposed | |
Csa04g00494 | Csa-Chr4:3242143 | Csa06g00967 | Csa-Chr6:7816316 | 5.47E-63 | transposed | |
Csa06g02453 | Csa-Chr6:21868898 | Csa06g00967 | Csa-Chr6:7816316 | 3.20E-10 | transposed | |
Csa07g01809 | Csa-Chr7:18345320 | Csa06g00967 | Csa-Chr6:7816316 | 1.99E-33 | transposed | |
Csa03g00425 | Csa-Chr3:3604442 | Csa06g00967 | Csa-Chr6:7816316 | 8.82E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31969 | PF00808 | CBFD_NFYB_HMF | 1.90E-27 | CL0012 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g00967 | K08065 | - | csv:101219076 | 265.388 |