Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00967 ATGGCGGATTCAGATAACGAATCGGGAGGTCACAACAGCAACGCCAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTGAGCAGGATCATGAAGAAGGCATTACCAGCAAACGCAAAAATCTCAAAAGATGCAAAAGAAACAGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACAGGGGAAGCATCGGACAAGTGCCAAAGAGAGAAAAGGAAGACAATCAACGGCGATGATTTACTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCGCTGAAGACTTATCTTCAAAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGGTGGTGGTGGGCCCGGCGGCAGTGGTGGAGGAGTCAACTCTTCTGGTGCTGCCGCTGGTGGCGCCGGTGGTGGATACAACGGAGTGGGTGGAATGTATGGTGGGGTAATGATGATGGGTCACCATCAGGGAGGCGTTTATGGTGGTGCTGGATTTCATCATATGGGAATCGGCAGCGGGAAAGGAGGAAGTGGTGGTGCTTCCGGCACCGGACACCGGTAG 606 52.64 MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGGGGGPGGSGGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQGGVYGGAGFHHMGIGSGKGGSGGASGTGHR* 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7816316 7818313 + CsaV3_6G009670.1 Csa06g00967 532594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00967 201 MobiDBLite consensus disorder prediction 1 24 - -
Csa06g00967 201 MobiDBLite consensus disorder prediction 114 140 - -
Csa06g00967 201 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Csa06g00967 201 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 175 IPR027113 GO:0001228|GO:0006355|GO:0016602
Csa06g00967 201 SUPERFAMILY Histone-fold 24 126 IPR009072 GO:0046982
Csa06g00967 201 MobiDBLite consensus disorder prediction 1 21 - -
Csa06g00967 201 Gene3D Histone, subunit A 15 132 IPR009072 GO:0046982
Csa06g00967 201 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 175 - -
Csa06g00967 201 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Csa06g00967 201 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Csa06g00967 201 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Csa06g00967 201 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa06g00967 Csa07g00248 CCT
Csa06g00967 Csa07g00248 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03243 Csa-Chr3:29752680 Csa06g00967 Csa-Chr6:7816316 2.66E-62 dispersed
Csa05g00631 Csa-Chr5:4179690 Csa06g00967 Csa-Chr6:7816316 2.02E-60 dispersed
Csa03g00408 Csa-Chr3:3477057 Csa06g00967 Csa-Chr6:7816316 1.94E-63 transposed
Csa04g00494 Csa-Chr4:3242143 Csa06g00967 Csa-Chr6:7816316 5.47E-63 transposed
Csa06g02453 Csa-Chr6:21868898 Csa06g00967 Csa-Chr6:7816316 3.20E-10 transposed
Csa07g01809 Csa-Chr7:18345320 Csa06g00967 Csa-Chr6:7816316 1.99E-33 transposed
Csa03g00425 Csa-Chr3:3604442 Csa06g00967 Csa-Chr6:7816316 8.82E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31969 PF00808 CBFD_NFYB_HMF 1.90E-27 CL0012 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00967 K08065 - csv:101219076 265.388