Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g00974 | ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGCGTGATCCTTGTAAATACAGCCTTATCCATTTCTATCTTCAAAGGCATAGTTCGGTCAATCCTCCATGTTGTTGGCATCCATCTCTCGTCCTCGCCTACATTACCTTCATCACCGGATTCCATGGAGAATGCTCCTGAATCCATAGAGTTCCATCTTAACCCCAATGGAAGTTACATTGAAGAGTTTCGCAGTCGAATCCCAGCAATTCTTTTCGACAAAGTACGAAGCTGCAAATGGCTTGAACACGATTGCTCGGTTTGCCTAACCCAATTTGAACCCGAATCAGAGATAAATCATTTATCTTGTGGCCATCTTTTCCATAGAGTGTGCTTGGAGAAGTGGTTGGACTACTGGAACCTTACATGCCCACTGTGTCGAACTCCGTTAATGCCAGAAGAAGACACAGCTTCCTGCTTTTGGTGA | 468 | 45.73 | MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW* | 156 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 7875193 | 7879384 | - | CsaV3_6G009740.1 | Csa06g00974 | 532601 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g00974 | 155 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED | 1 | 155 | - | - | |
Csa06g00974 | 155 | SUPERFAMILY | RING/U-box | 88 | 147 | - | - | |
Csa06g00974 | 155 | Pfam | Ring finger domain | 98 | 141 | IPR001841 | - | |
Csa06g00974 | 155 | SMART | ring_2 | 99 | 140 | IPR001841 | - | |
Csa06g00974 | 155 | PANTHER | - | 1 | 155 | IPR044249 | - | |
Csa06g00974 | 155 | ProSiteProfiles | Zinc finger RING-type profile. | 99 | 141 | IPR001841 | - | |
Csa06g00974 | 155 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 66 | 146 | IPR013083 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa06g00974 | Csa07g00239 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g00974 | Csa-Chr6:7875193 | Csa07g00240 | Csa-Chr7:1884966 | 4.77E-69 | dispersed | |
Csa06g00974 | Csa-Chr6:7875193 | Csa07g00239 | Csa-Chr7:1876800 | 2.48E-67 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g00974 | K16285 | - | csv:101216645 | 325.479 |