Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00974 ATGGGTCTCTCCAGCCTTCCTGCCCCTTCTGAAGGAGTACTAGGCGTGATCCTTGTAAATACAGCCTTATCCATTTCTATCTTCAAAGGCATAGTTCGGTCAATCCTCCATGTTGTTGGCATCCATCTCTCGTCCTCGCCTACATTACCTTCATCACCGGATTCCATGGAGAATGCTCCTGAATCCATAGAGTTCCATCTTAACCCCAATGGAAGTTACATTGAAGAGTTTCGCAGTCGAATCCCAGCAATTCTTTTCGACAAAGTACGAAGCTGCAAATGGCTTGAACACGATTGCTCGGTTTGCCTAACCCAATTTGAACCCGAATCAGAGATAAATCATTTATCTTGTGGCCATCTTTTCCATAGAGTGTGCTTGGAGAAGTGGTTGGACTACTGGAACCTTACATGCCCACTGTGTCGAACTCCGTTAATGCCAGAAGAAGACACAGCTTCCTGCTTTTGGTGA 468 45.73 MGLSSLPAPSEGVLGVILVNTALSISIFKGIVRSILHVVGIHLSSSPTLPSSPDSMENAPESIEFHLNPNGSYIEEFRSRIPAILFDKVRSCKWLEHDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEDTASCFW* 156
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7875193 7879384 - CsaV3_6G009740.1 Csa06g00974 532601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00974 155 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XERICO-RELATED 1 155 - -
Csa06g00974 155 SUPERFAMILY RING/U-box 88 147 - -
Csa06g00974 155 Pfam Ring finger domain 98 141 IPR001841 -
Csa06g00974 155 SMART ring_2 99 140 IPR001841 -
Csa06g00974 155 PANTHER - 1 155 IPR044249 -
Csa06g00974 155 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Csa06g00974 155 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 146 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa06g00974 Csa07g00239 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00974 Csa-Chr6:7875193 Csa07g00240 Csa-Chr7:1884966 4.77E-69 dispersed
Csa06g00974 Csa-Chr6:7875193 Csa07g00239 Csa-Chr7:1876800 2.48E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00974 K16285 - csv:101216645 325.479