Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g00975 | ATGGGTTTCATGTGTGATTTTTGTGGGGATCAGAGGTCAATGGTTTACTGCCGATCTGATGCTGCGTGTTTGTGCTTATCATGTGACCGTAATGTCCATTCTGCTAACGCCTTGTCGAGGCGTCATACGAGAACACTGTTGTGTGAAAGATGCCATTTGCAACCCTCCACAGTGAGGTGTATTGAAGAGAGAGTTTCTCTGTGTCAAAATTGTGATTGGACAGGTCATGGCTCATCTACCCTTGCTTCATCATCACACAAGAGGCAAACCATAAATTGTTACTCTGGTTGTCCATCCGCTGCAGAACTTTCTTGCATCTGGTCCTTTGTGTTGGATGTTCCATCTGTAAATGATGCTTGTGAGAAAGAGTTGGGATTGATGAGCATTGCTGAGACTGACTTGACGGGCGCCTGGAGTCCTTCGGAGAACAACGCTGGTCAAAGAATGCCTGGGTCAACAGAAGCCAGTGATGTTTGTAGCAGGGAAAAGTCAAATGTTTTGGTTGGATCATCTTCACTCATTGGCTCTAGGCCTCACACTTCAGATCAGCCAGTTGAATTGGATAATGTGGCTTTACCCAAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAATTCTGCGGTGAGGATGACGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGACCTATTTAGCATGAGCCTTAATCATTCTGAAGAGTTTTTCGAGAATGGTGGAATTGATAGCTTTTTTGAGGCAAAAGGCCTGTCTTTTGAAGATTCAGTTTCCCACAGTGCAGTTGTTGCAGAGGGTTCTTCCATGGGAGTGGTCCAACAAATGCAGCCAGCTTACAGCAATGGTGCCTCTGCTGACTCAGTGATGAGTACTAAAACCGAACCTATTCTCTGTTTCAATTCAAGGCAAGCCCAGTCGGGTATGTCCTTTTCTGGTCTTACTGGTGAGAGTAGTGCTGGTGATCATCAAGACTGTGGAGCCTCTTCAATGCTTCTAATGGGTGAGCCTCCATGGTGTGCACCTGGCACTGAAAGTTCCTTCCCATCTACTGATCGCAATAGTGCCGTTCAGCGTTATAAGGAGAAAAAGAAGACACGCAAGTTTGAGAAAACAGTGAGATATGCCACTCGCAAAGCGAGAGCTGATGTCAGAAGGCGTGTGAAGGGACGGTTTGTGAAGGCTGGAGAGGCATATGATTACGATCCACTAAACCAGGCTAGAAGCTGCTGA | 1248 | 45.67 | MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPSTVRCIEERVSLCQNCDWTGHGSSTLASSSHKRQTINCYSGCPSAAELSCIWSFVLDVPSVNDACEKELGLMSIAETDLTGAWSPSENNAGQRMPGSTEASDVCSREKSNVLVGSSSLIGSRPHTSDQPVELDNVALPKFCCPGTKVAEFCGEDDDLYKEFDMDEMDLNLENYEDLFSMSLNHSEEFFENGGIDSFFEAKGLSFEDSVSHSAVVAEGSSMGVVQQMQPAYSNGASADSVMSTKTEPILCFNSRQAQSGMSFSGLTGESSAGDHQDCGASSMLLMGEPPWCAPGTESSFPSTDRNSAVQRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQARSC* | 416 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 7889202 | 7896870 | - | CsaV3_6G009750.1 | Csa06g00975 | 532602 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g00975 | 415 | ProSiteProfiles | CCT domain profile. | 358 | 400 | IPR010402 | GO:0005515 | |
Csa06g00975 | 415 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 10 | 1 | 414 | - | - | |
Csa06g00975 | 415 | Pfam | CCT motif | 358 | 400 | IPR010402 | GO:0005515 | |
Csa06g00975 | 415 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Csa06g00975 | 415 | PANTHER | ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE | 1 | 414 | - | - | |
Csa06g00975 | 415 | CDD | Bbox1_BBX-like | 47 | 91 | - | - | |
Csa06g00975 | 415 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Csa06g00975 | 415 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa06g00975 | Csa07g00235 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g00998 | Csa-Chr4:7751656 | Csa06g00975 | Csa-Chr6:7889202 | 2.27E-14 | dispersed | |
Csa06g00975 | Csa-Chr6:7889202 | Csa01g02115 | Csa-Chr1:18437986 | 2.40E-08 | dispersed | |
Csa02g02703 | Csa-Chr2:23567212 | Csa06g00975 | Csa-Chr6:7889202 | 2.84E-30 | transposed | |
Csa04g00287 | Csa-Chr4:1790472 | Csa06g00975 | Csa-Chr6:7889202 | 1.49E-14 | transposed | |
Csa05g02652 | Csa-Chr5:27519572 | Csa06g00975 | Csa-Chr6:7889202 | 3.02E-07 | transposed | |
Csa06g00975 | Csa-Chr6:7889202 | Csa07g00235 | Csa-Chr7:1863318 | 2.70E-179 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
31970 | PF06203 | CCT | 4.50E-16 | CL0281 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g00975 | - | - | csv:101216401 | 837.41 |