Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00975 ATGGGTTTCATGTGTGATTTTTGTGGGGATCAGAGGTCAATGGTTTACTGCCGATCTGATGCTGCGTGTTTGTGCTTATCATGTGACCGTAATGTCCATTCTGCTAACGCCTTGTCGAGGCGTCATACGAGAACACTGTTGTGTGAAAGATGCCATTTGCAACCCTCCACAGTGAGGTGTATTGAAGAGAGAGTTTCTCTGTGTCAAAATTGTGATTGGACAGGTCATGGCTCATCTACCCTTGCTTCATCATCACACAAGAGGCAAACCATAAATTGTTACTCTGGTTGTCCATCCGCTGCAGAACTTTCTTGCATCTGGTCCTTTGTGTTGGATGTTCCATCTGTAAATGATGCTTGTGAGAAAGAGTTGGGATTGATGAGCATTGCTGAGACTGACTTGACGGGCGCCTGGAGTCCTTCGGAGAACAACGCTGGTCAAAGAATGCCTGGGTCAACAGAAGCCAGTGATGTTTGTAGCAGGGAAAAGTCAAATGTTTTGGTTGGATCATCTTCACTCATTGGCTCTAGGCCTCACACTTCAGATCAGCCAGTTGAATTGGATAATGTGGCTTTACCCAAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAATTCTGCGGTGAGGATGACGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGACCTATTTAGCATGAGCCTTAATCATTCTGAAGAGTTTTTCGAGAATGGTGGAATTGATAGCTTTTTTGAGGCAAAAGGCCTGTCTTTTGAAGATTCAGTTTCCCACAGTGCAGTTGTTGCAGAGGGTTCTTCCATGGGAGTGGTCCAACAAATGCAGCCAGCTTACAGCAATGGTGCCTCTGCTGACTCAGTGATGAGTACTAAAACCGAACCTATTCTCTGTTTCAATTCAAGGCAAGCCCAGTCGGGTATGTCCTTTTCTGGTCTTACTGGTGAGAGTAGTGCTGGTGATCATCAAGACTGTGGAGCCTCTTCAATGCTTCTAATGGGTGAGCCTCCATGGTGTGCACCTGGCACTGAAAGTTCCTTCCCATCTACTGATCGCAATAGTGCCGTTCAGCGTTATAAGGAGAAAAAGAAGACACGCAAGTTTGAGAAAACAGTGAGATATGCCACTCGCAAAGCGAGAGCTGATGTCAGAAGGCGTGTGAAGGGACGGTTTGTGAAGGCTGGAGAGGCATATGATTACGATCCACTAAACCAGGCTAGAAGCTGCTGA 1248 45.67 MGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPSTVRCIEERVSLCQNCDWTGHGSSTLASSSHKRQTINCYSGCPSAAELSCIWSFVLDVPSVNDACEKELGLMSIAETDLTGAWSPSENNAGQRMPGSTEASDVCSREKSNVLVGSSSLIGSRPHTSDQPVELDNVALPKFCCPGTKVAEFCGEDDDLYKEFDMDEMDLNLENYEDLFSMSLNHSEEFFENGGIDSFFEAKGLSFEDSVSHSAVVAEGSSMGVVQQMQPAYSNGASADSVMSTKTEPILCFNSRQAQSGMSFSGLTGESSAGDHQDCGASSMLLMGEPPWCAPGTESSFPSTDRNSAVQRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQARSC* 416
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 7889202 7896870 - CsaV3_6G009750.1 Csa06g00975 532602
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00975 415 ProSiteProfiles CCT domain profile. 358 400 IPR010402 GO:0005515
Csa06g00975 415 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 414 - -
Csa06g00975 415 Pfam CCT motif 358 400 IPR010402 GO:0005515
Csa06g00975 415 SMART bboxneu5 4 47 IPR000315 GO:0008270
Csa06g00975 415 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 414 - -
Csa06g00975 415 CDD Bbox1_BBX-like 47 91 - -
Csa06g00975 415 CDD Bbox1_BBX-like 5 47 - -
Csa06g00975 415 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Csa06g00975 Csa07g00235 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00998 Csa-Chr4:7751656 Csa06g00975 Csa-Chr6:7889202 2.27E-14 dispersed
Csa06g00975 Csa-Chr6:7889202 Csa01g02115 Csa-Chr1:18437986 2.40E-08 dispersed
Csa02g02703 Csa-Chr2:23567212 Csa06g00975 Csa-Chr6:7889202 2.84E-30 transposed
Csa04g00287 Csa-Chr4:1790472 Csa06g00975 Csa-Chr6:7889202 1.49E-14 transposed
Csa05g02652 Csa-Chr5:27519572 Csa06g00975 Csa-Chr6:7889202 3.02E-07 transposed
Csa06g00975 Csa-Chr6:7889202 Csa07g00235 Csa-Chr7:1863318 2.70E-179 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31970 PF06203 CCT 4.50E-16 CL0281 Csa TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00975 - - csv:101216401 837.41