Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00979 ATGGATGGATTTAGGAGTAACGACAACAAACAAGGCGTTGAAAGGCATTCCCGCACCGAGATGGGGTCGTTAGGCGAGAAAACTATACTGGAATTTGAAGATGAGAGCCTTGTTAGTCCAGTATCATTAACTAGAAAGAACTTTTCGATTGAGGGATCTATCCATAGTTCTTCATTGGGTGGTGGTTCGCAGAAACTTAGTTGCAGTAACATGAAGAACAGGGTATTTGGCAGCATTAAGATTGTCGTCTTCTCGGCTAAAATAAACCTTCTGATGCCTTTTGGCCCTCTAGCAATAATAGTCAGCACCTTGTCTGGTCACCATGGTTGGGTCTTCCTCTTAAGCTTGTTGGGGATCATACCTCTTGCTGAGCGTTTGGGCTATGCAACTGAACAACTGGCATGCTATACTGGAGCCACAGTTGGAGGTCTTCTGAATGCTACTTTTGGAAATGCCACAGAATTGATAATATCAATATATGCATTGCGAAGAGGAATGATACGTGTTGTTCAACAGTCATTATTAGGTTCAATTTTGTCTAATATGTTATTAGTACTTGGATGTGCATTCTTTGCTGGTGGAATTGTGGTTTCTAAGAGAGAGCAGGTCTTTAGTAAGGCAGCTGCTACCGTGAATTCTGGATTGCTGTTAATGGCGGTAATGGGCCTTCTATTTCCTGCTGTCCTTCGTTCCACACACACAGAGTTGCACTCTGGAAAGTCAGAGCTGGCTCTTTCAAGATTTAGTAGCGGCATTATGTTGGTGGCATATGCTGCCTATCTTGTTTTTCAGTTGAAAAGTGATAAGAACTTATATCTCCCGGTTGATGAGGTGGATAATGAAGGGAGTTCTGATGATGAAGAAGCTCCTGAGATTTCTATGTGGGAATCAATTGTTTGGCTGTCTATATTGACCATATGGATCTCCGTCCTCTCCGAATACTTGGTTAATGCAATCGAGGGGGCGTCGGTTGCAATGAACATACCTGTAGCATTCATCAGTGTTATTCTGTTACCTATTGTTGGGAATGCTGCAGAGCATGCAGGTGCCATCATGTTTGCCATGAAAGATAAGCTTGACATTTCTTTGGGTGTCGCGATAGGATCATCGACACAGATATCTATGTTTGGGATTCCCTTTTGTGTGGTCATTGGTTGGATCATGGGATGTCCTATGGACTTGAATTTTCAACTTTTTGAAACCGCCACGCTTTTCATCACGGTCATCGTCGTGGCCTTCATGTTGCAGGATGGAACTTCAAATTACCTCAAAGGACTAATGCTTATTCTCTGCTACCTGATAGTAGCTGCAAGTTTCTTTGTACATATTGATCCAGCATCAGTTGGAGACAAGACCCGAAAACCTGGTGTATGA 1374 42.87 MDGFRSNDNKQGVERHSRTEMGSLGEKTILEFEDESLVSPVSLTRKNFSIEGSIHSSSLGGGSQKLSCSNMKNRVFGSIKIVVFSAKINLLMPFGPLAIIVSTLSGHHGWVFLLSLLGIIPLAERLGYATEQLACYTGATVGGLLNATFGNATELIISIYALRRGMIRVVQQSLLGSILSNMLLVLGCAFFAGGIVVSKREQVFSKAAATVNSGLLLMAVMGLLFPAVLRSTHTELHSGKSELALSRFSSGIMLVAYAAYLVFQLKSDKNLYLPVDEVDNEGSSDDEEAPEISMWESIVWLSILTIWISVLSEYLVNAIEGASVAMNIPVAFISVILLPIVGNAAEHAGAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVIGWIMGCPMDLNFQLFETATLFITVIVVAFMLQDGTSNYLKGLMLILCYLIVAASFFVHIDPASVGDKTRKPGV* 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7944528 7951003 + CsaV3_6G009790.1 Csa06g00979 532606

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00979 457 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 14 456 IPR004713 GO:0006812|GO:0008324|GO:0016021
Csa06g00979 457 TIGRFAM cax: calcium/proton exchanger 92 440 IPR004798 GO:0006816|GO:0015369
Csa06g00979 457 MobiDBLite consensus disorder prediction 1 20 - -
Csa06g00979 457 PANTHER VACUOLAR CATION/PROTON EXCHANGER 14 456 - -
Csa06g00979 457 Pfam Sodium/calcium exchanger protein 298 437 IPR004837 GO:0016021|GO:0055085
Csa06g00979 457 Pfam Sodium/calcium exchanger protein 110 265 IPR004837 GO:0016021|GO:0055085
Csa06g00979 457 Gene3D - 283 441 IPR044880 -
Csa06g00979 457 Gene3D - 138 281 IPR044880 -
Csa06g00979 457 TIGRFAM caca2: calcium/proton exchanger 78 440 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00979 K07300 chaA, CAX; Ca2+:H+ antiporter - csv:101215915 849.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g03075 Csa-Chr3:28931882 Csa06g00979 Csa-Chr6:7944528 8.09E-115 dispersed
Csa04g01618 Csa-Chr4:15535808 Csa06g00979 Csa-Chr6:7944528 4.32E-121 dispersed
Csa03g02811 Csa-Chr3:26947129 Csa06g00979 Csa-Chr6:7944528 0 transposed
Csa03g00398 Csa-Chr3:3354246 Csa06g00979 Csa-Chr6:7944528 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa05g02508 . 56 412 Antiporters AT5G46110 76.2 4.4e-149 524.6
Csa03g00529 . 18 395 Antiporters AT5G54800 76.0 3.4e-159 558.1
Csa01g03356 . 1 395 Antiporters AT5G54800 73.0 3.7e-158 554.7
Csa06g03531 . 19 392 Antiporters AT5G54800 73.6 1.1e-146 516.5
Csa03g00996 . 89 402 Antiporters AT5G54800 53.2 4.5e-87 318.5
Csa05g01908 . 43 398 Antiporters AT3G01550 63.3 1.0e-120 430.3
Csa01g00856 . 53 417 Antiporters AT3G01550 58.4 1.3e-112 403.3
Csa01g00856 . 1 420 Antiporters AT5G33320 73.0 2.5e-157 552.0
Csa05g01908 . 77 401 Antiporters AT5G33320 62.3 1.4e-110 396.7
Csa01g03356 . 22 396 Antiporters AT1G61800 75.3 2.5e-160 562.0
Csa03g00529 . 1 396 Antiporters AT1G61800 72.8 2.3e-158 555.4
Csa06g03531 . 1 388 Antiporters AT1G61800 74.6 2.5e-157 552.0
Csa03g00996 . 106 408 Antiporters AT1G61800 52.8 2.8e-87 319.3
Csa03g00996 . 1 420 Antiporters AT5G17630 69.3 7.3e-152 533.9
Csa01g03356 . 81 394 Antiporters AT5G17630 53.6 7.9e-90 327.8
Csa03g00529 . 89 394 Antiporters AT5G17630 54.4 2.3e-89 326.2
Csa06g03531 . 92 389 Antiporters AT5G17630 53.8 1.7e-87 320.1
Csa03g00398 . 9 378 Antiporters AT3G13320 79.5 2.6e-160 562.0
Csa06g00979 . 72 449 Antiporters AT3G13320 76.6 8.0e-157 550.4
Csa03g02811 . 57 426 Antiporters AT3G13320 75.7 1.3e-154 543.1
Csa04g01618 CCT,ECH 5 429 Antiporters AT2G38170 72.2 1.5e-164 576.2
Csa03g03075 CCT,ECH 8 407 Antiporters AT2G38170 60.8 7.6e-129 457.6
Csa01g02509 . 34 402 Antiporters AT2G38170 59.7 4.0e-114 408.7
Csa03g00398 . 9 378 Antiporters AT2G38170 50.3 2.6e-89 326.2
Csa04g01618 CCT,ECH 1 397 Antiporters AT3G51860 72.7 3.1e-151 531.9
Csa03g03075 CCT,ECH 4 395 Antiporters AT3G51860 61.7 5.3e-127 451.4
Csa01g02509 . 39 378 Antiporters AT3G51860 65.0 3.4e-113 405.6
Csa06g00979 . 64 416 Antiporters AT3G51860 50.8 3.3e-84 309.3
Csa03g00398 . 9 349 Antiporters AT3G51860 51.3 4.7e-83 305.4
Csa04g01618 CCT,ECH 34 434 Antiporters AT5G01490 61.5 2.1e-136 482.6
Csa03g03075 CCT,ECH 8 407 Antiporters AT5G01490 57.2 1.8e-119 426.4
Csa01g02509 . 28 404 Antiporters AT5G01490 55.5 1.7e-109 393.3
Csa03g00398 . 8 378 Antiporters AT1G55720 75.8 1.1e-150 530.0
Csa06g00979 . 72 445 Antiporters AT1G55720 73.6 2.9e-146 515.4
Csa03g02811 . 57 423 Antiporters AT1G55720 71.2 3.1e-140 495.4
Csa03g00398 . 8 378 Antiporters AT1G55730 80.3 8.8e-164 573.5
Csa06g00979 . 54 445 Antiporters AT1G55730 74.9 3.8e-159 558.1
Csa03g02811 . 48 427 Antiporters AT1G55730 75.1 1.8e-156 549.3
Csa04g01618 CCT,ECH 65 430 Antiporters AT1G55730 51.1 7.8e-96 347.8
Csa01g02836 . 4 529 Antiporters AT5G27150 76.1 2.0e-231 798.5
Csa06g00570 . 22 527 Antiporters AT5G27150 75.4 2.0e-218 755.4
Csa07g01780 . 25 532 Antiporters AT5G27150 69.7 3.1e-203 704.9
Csa07g00987 . 12 517 Antiporters AT5G27150 61.0 3.4e-170 595.1
Csa06g00570 . 5 536 Antiporters AT3G06370 69.6 3.9e-209 724.5
Csa01g02836 . 5 528 Antiporters AT3G06370 70.3 8.9e-206 713.4
Csa07g01780 . 25 534 Antiporters AT3G06370 66.3 2.0e-189 659.1
Csa07g00987 . 5 517 Antiporters AT3G06370 59.1 2.4e-163 572.4
Csa07g00987 . 8 524 Antiporters AT5G55470 71.0 1.2e-212 736.1
Csa01g02836 . 18 515 Antiporters AT5G55470 60.5 6.8e-171 597.4
Csa06g00570 . 10 514 Antiporters AT5G55470 58.0 2.7e-167 585.5
Csa07g01780 . 16 518 Antiporters AT5G55470 56.6 2.1e-156 549.3
Csa01g02836 . 10 532 Antiporters AT3G05030 77.9 1.4e-235 812.4
Csa06g00570 . 22 527 Antiporters AT3G05030 76.0 1.2e-223 772.7
Csa07g01780 . 25 535 Antiporters AT3G05030 69.2 4.4e-205 711.1
Csa07g00987 . 12 517 Antiporters AT3G05030 60.2 2.7e-170 595.5
Csa03g02456 . 102 666 Antiporters AT1G15460 70.4 1.7e-228 788.9
Csa02g02363 . 99 659 Antiporters AT1G15460 64.5 2.6e-216 748.4
Csa03g02859 . 102 645 Antiporters AT1G15460 59.0 2.7e-181 632.1
Csa01g00855 . 102 644 Antiporters AT1G15460 57.7 9.1e-177 617.1
Csa03g02859 . 3 709 Antiporters AT3G06450 69.4 2.2e-292 1001.5
Csa01g00855 . 3 683 Antiporters AT3G06450 69.1 5.5e-280 960.3
Csa03g02456 . 6 647 Antiporters AT3G06450 55.8 1.2e-213 740.0
Csa02g02363 . 3 638 Antiporters AT3G06450 55.7 3.4e-213 738.4
Csa03g02859 . 1 716 Antiporters AT2G47160 78.7 0.0e+00 1154.0
Csa01g00855 . 1 670 Antiporters AT2G47160 74.2 2.7e-303 1037.7
Csa02g02363 . 4 638 Antiporters AT2G47160 57.5 3.6e-215 745.0
Csa03g02456 . 1 647 Antiporters AT2G47160 56.3 1.1e-214 743.4
Csa03g02456 . 5 663 Antiporters AT1G74810 69.7 1.8e-272 935.3
Csa02g02363 . 4 660 Antiporters AT1G74810 65.6 6.1e-257 883.6
Csa03g02859 . 7 645 Antiporters AT1G74810 59.0 9.6e-218 753.4
Csa01g00855 . 7 644 Antiporters AT1G74810 58.4 3.6e-217 751.5
Csa03g02859 . 1 708 Antiporters AT3G62270 81.4 0.0e+00 1160.2
Csa01g00855 . 1 706 Antiporters AT3G62270 74.7 5.1e-307 1050.0
Csa02g02363 . 4 638 Antiporters AT3G62270 59.3 1.5e-221 766.1
Csa03g02456 . 1 647 Antiporters AT3G62270 57.9 3.7e-217 751.5
Csa02g02363 . 4 657 Antiporters AT4G32510 67.9 1.6e-262 902.1
Csa03g02456 . 1 664 Antiporters AT4G32510 64.2 2.2e-251 865.1
Csa03g02859 . 1 645 Antiporters AT4G32510 55.5 6.2e-209 724.2
Csa01g00855 . 1 650 Antiporters AT4G32510 54.7 2.9e-206 715.3
Csa02g02363 . 4 655 Antiporters AT5G25430 70.2 5.1e-264 907.1
Csa03g02456 . 7 664 Antiporters AT5G25430 65.7 1.5e-244 842.4
Csa03g02859 . 7 645 Antiporters AT5G25430 56.2 5.7e-207 717.6
Csa01g00855 . 7 656 Antiporters AT5G25430 54.7 1.9e-202 702.6
Csa05g01302 . 12 1140 Antiporters AT2G01980 64.8 0.0e+00 1374.4
Csa05g01302 . 20 738 Antiporters AT1G14660 66.1 1.9e-272 935.3
Csa02g01840 . 29 587 Antiporters AT5G11800 80.0 1.0e-239 826.2
Csa01g02914 . 19 588 Antiporters AT5G11800 75.7 1.9e-225 778.9
Csa03g01643 . 57 578 Antiporters AT5G11800 68.6 1.6e-189 659.4
Csa03g01643 . 31 576 Antiporters AT5G51710 81.9 4.8e-247 850.5
Csa02g01840 . 51 560 Antiporters AT5G51710 70.0 2.2e-188 655.6
Csa01g02914 . 51 560 Antiporters AT5G51710 69.0 1.3e-183 639.8
Csa02g01840 . 44 587 Antiporters AT2G19600 80.8 1.2e-232 802.7
Csa01g02914 . 39 582 Antiporters AT2G19600 81.4 3.8e-231 797.7
Csa03g01643 . 35 563 Antiporters AT2G19600 67.9 1.5e-182 636.3
Csa03g01825 . 143 382 Antiporters AT1G49810 74.0 1.2e-93 340.5
Csa03g01825 . 1 382 Antiporters AT3G19490 73.4 4.0e-148 521.9
Csa04g01416 . 101 571 Antiporters AT5G12860 90.7 6.5e-249 856.7
Csa04g00955 . 83 578 Antiporters AT5G64280 67.6 1.1e-195 679.9
Csa04g00955 . 1 578 Antiporters AT5G64290 70.7 3.9e-217 751.1
Csa07g00489 . 3 377 Antiporters AT4G28390 81.2 8.9e-173 603.2
Csa02g01936 . 3 389 Antiporters AT4G28390 73.0 5.8e-156 547.4
Csa02g01937 . 3 389 Antiporters AT4G28390 72.5 7.6e-156 547.0
Csa01g00624 . 1 308 Antiporters AT4G28390 61.9 1.5e-108 389.8
Csa02g01936 . 1 391 Antiporters AT3G08580 78.2 1.6e-169 592.4
Csa02g01937 . 1 391 Antiporters AT3G08580 77.9 1.3e-168 589.3
Csa07g00489 . 62 376 Antiporters AT3G08580 83.5 3.4e-148 521.5
Csa01g00624 . 8 308 Antiporters AT3G08580 58.0 3.2e-98 355.5
Csa02g01936 . 1 391 Antiporters AT5G13490 81.2 2.9e-179 624.8
Csa02g01937 . 1 391 Antiporters AT5G13490 81.2 3.8e-179 624.4
Csa07g00489 . 8 376 Antiporters AT5G13490 79.2 7.9e-161 563.5
Csa01g00624 . 9 308 Antiporters AT5G13490 60.8 8.1e-105 377.5
Csa01g00624 . 5 302 Antiporters AT5G17400 78.2 8.6e-134 473.4
Csa07g00489 . 77 363 Antiporters AT5G17400 64.1 2.5e-109 392.1
Csa02g01936 . 90 381 Antiporters AT5G17400 62.7 8.1e-108 387.1
Csa02g01937 . 90 381 Antiporters AT5G17400 62.7 8.1e-108 387.1
Csa01g02791 . 10 355 Antiporters AT1G08960 62.3 2.5e-104 376.3
Csa03g03754 . 16 568 Antiporters AT5G17850 50.5 9.5e-147 517.3
Csa04g00084 . 1 538 Antiporters AT2G47600 71.4 1.4e-216 749.2
Csa03g02399 CCT 1 300 Antiporters AT1G79900 69.1 9.2e-117 416.8
Csa07g02237 CCT 2 269 Antiporters AT1G79900 63.1 7.1e-93 337.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000498 3 6 4 4 3 3 3 3 3 3 3 3 3 3 3 4 3 3 4 3 2 3 3 3 2 3 3 9 16 2 113
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g00979 Csa_Chr06 FPKM 4.791254 4.215365 4.881184 5.028906 3.236635 3.270161 3.349896 4.564926 3.721987 4.669815
Csa06g00979 Csa_Chr00 FPKM 5.034172 4.73065 7.610101 7.529336 4.831124 4.783007 4.846519 6.733361 5.276551 7.129229