Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g00994 ATGGAGGAGAAGCAAGGTATGAGCACTACCAAGCCTACCGACAAATGGATGGCATTTGACAGCGAATCGAACACAACAAACACTCCTGGAAATGAATCAAAAGAAGACAAAAAAAGCTTGCAATCTTCTTCCAGAGTATCAAAAGAAGCAAACATAGCAGAAAGGGCAGCGGAGTGGGGACTGGTGGTGGAGACAAACGTGGAAGAAGGCAGTTTCAAGGCCATTGTGGGGAGAGCATCTGGGGAAGGAGGGGGCAGCAAAAGATCATCAGAGAAAATCAGTGGTTCAGGAAGAACTTCAAGCTTTAGCAATGAAACCTCTGGAGTTTTTCCAAGAGTATCACAAGAGTTGAAGGATGCTTTAGCTTCTTTGGAACAGACATTTGTGGTCTCTGATGCCACAAAACCAGACTGCCCCATCGTGTATGCGAGCAGTGGCTTCTTTGGCATGACTGGTTATGCTTCAGAGGAGGTCATTGGAAGGAACTGCCGTTTTCTTCAGGGATCAGAGACAGACCAGAAAGAAGTCGACAAAATTCGATATGCAGTGAAAAACGGCAAAAGCTACTGCGGAAGGCTTTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTTCTGACAGTCACGCCTATCAAGGATGACAATGGCAACACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTACACAGAAGGCATAAATGATAAAGCGTTACGACCGAACGGGTTGCCAAAGTCATTAATCCGCTATGATGCTCGCCAGAAGGAAAAGGCAATGGTTTCCATCACAGAGGTTGTTCAGACTGTGAAGAATCCTCGATCTCATGGTCGAGCTATGAGTCATGACACTACCAGAAAAAAAGAAGATTTTGAAAAGTTCAATCTTGACTATGTTCTTCCAAAACCAGTTGAAGCTGCAACTAATACACCGGGTAGACATACTCCTCTACATGACCTCAAAGATGATGGGTTAGGCAAAAAACCTAGGCTATCGAGTCGAGTTTCTTTAATGGGTTTCAAAGGGAAATCTCTAAGCAGTGCAAGGAAGCTTGAAGTAACAGACTTCGAACCAGAAATTTTGATGACCGACGAAATAGAACGGTCTGATAGTTGGGATCGTGCTGAAAGAGAAAAGGATATTCGCCAAGGAATTGATTTAGCTACCACGTTGGAGCGAATTGAGAAAAATTTTGTTATTACTGATCCAAGACTTCCTGATAATCCAATTATATTTGCGTCAGACAGCTTTCTTGAATTGACGGAATATACACGTGAAGAAATTTTGGGACGAAACTGTCGGTTCCTTCAAGGACCTGAAACAGACCAAGAAACTGTCTCAAAGATAAGGGATGCCATTAGGGAACAAAGAGAAATAACTGTTCAGTTGATCAACTATACCAAGACTGGTAAAAAGTTCTGGAACTTGTTCCACTTGCAACCAATGCGTGATGAAACGGGAGAGCTTCAGTATTTCATTGGTGTTCAACTAGATGGAAGTGGGCACGTGGAACCTTTGCAAAACCGTCTTTCCGAGACAGCAGAGCTGCAAAGTGCCAAGCTGGTTAAAGCCACTGCAGAAAATGTCGATGAGGCTGTCCGTGAACTTCCCGATGCCAACTTGAGACCAGAAGATTTGTGGGCAATTCATTCTCAACCAGTCTTCCCAAGGCCTCACAAGAAGCATAGTTCTTCTTGGACTGCTATACAGAAGATCATAGGACGTGGTGAAAAAATTGGACTCAAACATTTTAAGCCAATTAAACCACTGGGTTGTGGAGACACTGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGTGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTTTTGAATCGAAACAAGGTTCACAGAGCATGCATTGAAAGGCAAATCATTGCGCTTCTGGATCATCCTTTTCTTCCCACACTGTACACTTCATTTGAGACCCCTACACACGTTTGTTTGATAACAGACTTCTGCTCTGGTGGGGAATTATTCGCATTGCTTGATAAGCAACCGATGAAAATGTTTAAAGAAGATTCTGCAAGGTTCTATGCGGCAGAGGTTGTCATTGGCTTGGAATATCTTCACTGTCTAGGAATCATTTACCGGGATCTGAAGCCTGAAAATATTCTTCTCCAGAAAGATGGCCATGTTACGCTTGCTGACTTCGATTTATCACTTGTGACATCCTGCAAGCCGCAGATTGTGAAGTATCCATTGCTACAAGGTAGAAGGAGATCTCGAAGTCAACCACCACCAGTATTTGTTGCAGAGCCAATCACACAATCAAATTCTTTTGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATAACAGGGGAAGGCCACAGCAGCTCTATTGATTGGTGGGCTCTTGGTATATTGTTGTATGAGATGCTTTATGGTCGCACACCTTTCAGGGGAAAGAACAGGCAGAAGACTTTTGGTAACATCTTGCACAAAGATCTCACCTTCCCAAGTAGCATTCAGGTAAGTCTTGCAGCAAGGCAGTTGATCAATGCATTGCTACAAAGAGACCCTGCCAGACGTTTAGGATCAAGTACAGGTGCAAATGAAATCAAACAGCACCCGTTTTTCCAATCAATTAACTGGCCACTGATCCGGTGTATGGTCCCGCCGCCATTAGAATCACCTCTTCAACTTACTGGAAAAGATGGAACAACCAAGGCTGTAAACTGGGAAGATGATGGTGTGCTTAGCTCAATGGATATGGATTATTTCTGA 2766 43.28 MEEKQGMSTTKPTDKWMAFDSESNTTNTPGNESKEDKKSLQSSSRVSKEANIAERAAEWGLVVETNVEEGSFKAIVGRASGEGGGSKRSSEKISGSGRTSSFSNETSGVFPRVSQELKDALASLEQTFVVSDATKPDCPIVYASSGFFGMTGYASEEVIGRNCRFLQGSETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKYTEGINDKALRPNGLPKSLIRYDARQKEKAMVSITEVVQTVKNPRSHGRAMSHDTTRKKEDFEKFNLDYVLPKPVEAATNTPGRHTPLHDLKDDGLGKKPRLSSRVSLMGFKGKSLSSARKLEVTDFEPEILMTDEIERSDSWDRAEREKDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQETVSKIRDAIREQREITVQLINYTKTGKKFWNLFHLQPMRDETGELQYFIGVQLDGSGHVEPLQNRLSETAELQSAKLVKATAENVDEAVRELPDANLRPEDLWAIHSQPVFPRPHKKHSSSWTAIQKIIGRGEKIGLKHFKPIKPLGCGDTGSVHLVELLGTSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFETPTHVCLITDFCSGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPLLQGRRRSRSQPPPVFVAEPITQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPARRLGSSTGANEIKQHPFFQSINWPLIRCMVPPPLESPLQLTGKDGTTKAVNWEDDGVLSSMDMDYF* 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8056924 8069153 + CsaV3_6G009940.1 Csa06g00994 532621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g00994 921 PANTHER BNAA02G07840D PROTEIN 85 919 - -
Csa06g00994 921 ProSiteProfiles Protein kinase domain profile. 586 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00994 921 MobiDBLite consensus disorder prediction 87 108 - -
Csa06g00994 921 TIGRFAM sensory_box: PAS domain S-box protein 139 230 IPR000014 -
Csa06g00994 921 TIGRFAM sensory_box: PAS domain S-box protein 410 500 IPR000014 -
Csa06g00994 921 Gene3D Transferase(Phosphotransferase) domain 1 670 890 - -
Csa06g00994 921 MobiDBLite consensus disorder prediction 317 331 - -
Csa06g00994 921 ProSiteProfiles PAS repeat profile. 113 186 IPR000014 -
Csa06g00994 921 ProSitePatterns Serine/Threonine protein kinases active-site signature. 707 719 IPR008271 GO:0004672|GO:0006468
Csa06g00994 921 SMART serkin_6 586 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00994 921 ProSiteProfiles PAS repeat profile. 385 458 IPR000014 -
Csa06g00994 921 Gene3D PAS domain 374 538 - -
Csa06g00994 921 ProSiteProfiles PAC domain profile. 459 513 IPR000700 -
Csa06g00994 921 ProSitePatterns Protein kinases ATP-binding region signature. 592 615 IPR017441 GO:0005524
Csa06g00994 921 MobiDBLite consensus disorder prediction 308 332 - -
Csa06g00994 921 SUPERFAMILY PYP-like sensor domain (PAS domain) 401 500 IPR035965 -
Csa06g00994 921 CDD STKc_phototropin_like 584 892 - -
Csa06g00994 921 MobiDBLite consensus disorder prediction 10 30 - -
Csa06g00994 921 CDD PAS 140 229 IPR000014 -
Csa06g00994 921 Gene3D Phosphorylase Kinase; domain 1 585 669 - -
Csa06g00994 921 SUPERFAMILY PYP-like sensor domain (PAS domain) 134 226 IPR035965 -
Csa06g00994 921 Pfam Protein kinase domain 588 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g00994 921 ProSiteProfiles PAC domain profile. 187 241 IPR000700 -
Csa06g00994 921 Gene3D PAS domain 127 296 - -
Csa06g00994 921 SUPERFAMILY Protein kinase-like (PK-like) 563 897 IPR011009 -
Csa06g00994 921 PANTHER FLIPPASE KINASE 1-RELATED 85 919 - -
Csa06g00994 921 CDD PAS 400 500 IPR000014 -
Csa06g00994 921 SMART pas_2 115 184 IPR000014 -
Csa06g00994 921 SMART pas_2 387 456 IPR000014 -
Csa06g00994 921 MobiDBLite consensus disorder prediction 1 49 - -
Csa06g00994 921 MobiDBLite consensus disorder prediction 77 108 - -
Csa06g00994 921 SMART pac_2 462 504 IPR001610 -
Csa06g00994 921 SMART pac_2 190 232 IPR001610 -
Csa06g00994 921 Pfam PAS domain 134 230 IPR000014 -
Csa06g00994 921 Pfam PAS domain 408 500 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02417 Csa-Chr5:26200616 Csa06g00994 Csa-Chr6:8056924 4.43E-23 dispersed
Csa06g00994 Csa-Chr6:8056924 Csa03g03977 Csa-Chr3:34781972 1.00E-114 dispersed
Csa06g01697 Csa-Chr6:14924855 Csa06g00994 Csa-Chr6:8056924 0 transposed
Csa05g01113 Csa-Chr5:11354924 Csa06g00994 Csa-Chr6:8056924 1.14E-14 transposed
Csa06g00994 Csa-Chr6:8056924 Csa07g00227 Csa-Chr7:1788691 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78340 PF00069 Pkinase 8.10E-62 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g00994 K20715 - csv:101215355 1819.28