Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01017 ATGTTTTATAGCAAACCACATCAAAACCATAAAACCCGCGAATGCCGCTTTGTCCATTACTATATTACAAATTCAGTTTCTACACCACCGTTGCTTTTTTTCTTCTTCTTCTTTCTCCCAAAATTTGGTGTCTTTAAATCAAATTCCCCACACCCACTTTTAGAATTCCAAACTCCTACAACTGGGTTGGAGGAAAAACAAGAGGAAGAAGTAGTGGTATATTATTTGGTTATGGAGAGACAATATGGATCAAATAGTTTGAGTCCATGTTCCTCCATTTCTAATGGGGTTCTACAAGAAACTGTAGATGTCACCAAATGTTTGACGGAAGCCAATGAATTAATCGAAGCCATAGGGGCTTTTTCTGGGTTTCGAAAGACCCAATCTAAGGAGTGTTTGAATTTGGTTAGGAGGTTGAAGATGCTTGTTCCTTTGTTGGAGGAGATTAGAGACCTTCACGATATGCTTCCTGCTGAGGCTTTGAGTTCCCATATTTCTCTTTTGAAAGAGGCTCTTGTTTTGGCCAAAAGGTTACTGAAGAATTGCCACAATGGGAGTAAGATTTACCTGGCGTTTGAGAATGAGGCTGTGATGGCAAGGTTTCATGTTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATACCTTATGATGAGCTTGGAGTCTCAGTTGAATTGAAAGAGCAAGTTGAGCTCATGTCGACACAACTCAAAAGAGCAAAGTGTAGAAAAGATACACAAGACATGGAACTAGCAATGGACATGATGGTTGTTTTTTCAAAAAACGACGAGAGAAATGCTGATCCTGTTATACTTGAAAGATTGGCAAATAAATTAGAACTACGTAAAATTGCTGATTTGGAAGCAGAAACTATAGCTGTACAAAAATTAGTTAGACATAGAGGTGTGCCGAATTCTGAAAGTCTCCAGCAAATTATAGACCTTCTACGCAAGTTTAAACAAATTGCAGGTATGGACAATAATGTTGCTCCTGATGGTCCTGTTGTGTCGAAAAGTCTGCAACGGTGTAAATCTACATTAATCCCTCATGAATTCCTCTGTCCCATTACCTTGGAAATCATGACAGATCCTGTCATTGTGGCTACTGGGCAGACTTATGACCGAGAAAGTATACAGAAATGGTTGAATTCTAACCACCGGACCTGCCCGAAAAGCGGACAGACATTAGTGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTCATTTTGCAGTGGTGTCAAAAGAATAACTACGAATTGCCGAAGAAGGAAGTAGTTGCTGGAATGGGAGACACTCCATCTGATCTCGCTGGAGAAATCTCCTCTTTAGTCCACAATCTATCCTCGAGCCAGTTGGATATCCAGAGAGAGGCTATCATCAAGATCCGTGTCCTTTCCAAGGAGAACCCTGAGAACAGAGTTTGGATCGCAAATAGCGGAGTCATCCCTCCGTTGGTTAAGCTTCTCTCCTACCCAGATCTCAATTTCCAAGAACACACGGTAACCGCTCTATTGAACTTGTCTATTGACGATTCGAATAAAAGACTCATAGCGAGAGAAGGAGCAATTCCTGCTATCATAGAAATCCTGCAGCGTGGAACGGAAGAGGCTAAGGAAAACTCTGCTGCTGCCCTGTTTAGCTTGTCAATGTTAGATGAAAACAAGGTTCTGATTGGTTCTCTGAAGGGAATTCCGCCGTTGGTATTACTTCTTCGAGATGGTACAATCCGAGGGAAGAAGGATGCTGCCACTGCACTGTTTAACCTGTCACTGAATCAAGCAAACAAGTCCCGAGCCATCAAAGCTGGCATCATACAGCCCCTTCTCGCTTTGCTGGAGGATAAGAACTTAGGAATGGTTGATGAAGCTTTATCAATCTTGTTACTCCTTGCATCACATCCCGAGGGACGGTCCGAGATCGGCAATAACTCTTTCATTGAAATTCTAGTGAACATCATAATAGACGGGACTCCGAAGAACAAGGAATGTGCTACATCGTTGCTTCTGGAGCTGGGACGAAACAATTCGCCTTCCATTTTGGTTGCACTGCAATTTGGAGTATATGAACATCTGGTAGAGCTAACAAGATGTGGGACAAGTAGAGCCCAGAGAAAAGCAACCTCACTTTTGCAGTATATGAGCAAGTGTGAACACATTCCCTAA 2169 42.14 MFYSKPHQNHKTRECRFVHYYITNSVSTPPLLFFFFFFLPKFGVFKSNSPHPLLEFQTPTTGLEEKQEEEVVVYYLVMERQYGSNSLSPCSSISNGVLQETVDVTKCLTEANELIEAIGAFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHDMLPAEALSSHISLLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHVVYDKLKEALDGIPYDELGVSVELKEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILERLANKLELRKIADLEAETIAVQKLVRHRGVPNSESLQQIIDLLRKFKQIAGMDNNVAPDGPVVSKSLQRCKSTLIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLNSNHRTCPKSGQTLVHLSLAPNYALKNLILQWCQKNNYELPKKEVVAGMGDTPSDLAGEISSLVHNLSSSQLDIQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDSNKRLIAREGAIPAIIEILQRGTEEAKENSAAALFSLSMLDENKVLIGSLKGIPPLVLLLRDGTIRGKKDAATALFNLSLNQANKSRAIKAGIIQPLLALLEDKNLGMVDEALSILLLLASHPEGRSEIGNNSFIEILVNIIIDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLVELTRCGTSRAQRKATSLLQYMSKCEHIP* 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8283110 8287622 - CsaV3_6G010170.1 Csa06g01017 532644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01017 722 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 564 606 IPR000225 GO:0005515
Csa06g01017 722 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 105 719 - -
Csa06g01017 722 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 482 524 IPR000225 GO:0005515
Csa06g01017 722 ProSiteProfiles U-box domain profile. 347 421 IPR003613 GO:0004842|GO:0016567
Csa06g01017 722 PANTHER U BOX DOMAIN-CONTAINING 105 719 - -
Csa06g01017 722 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 523 565 IPR000225 GO:0005515
Csa06g01017 722 Coils Coil 223 243 - -
Csa06g01017 722 SUPERFAMILY ARM repeat 442 716 IPR016024 -
Csa06g01017 722 Pfam U-box domain 348 418 IPR003613 GO:0004842|GO:0016567
Csa06g01017 722 SMART arm_5 512 552 IPR000225 GO:0005515
Csa06g01017 722 SMART arm_5 594 634 IPR000225 GO:0005515
Csa06g01017 722 SMART arm_5 553 593 IPR000225 GO:0005515
Csa06g01017 722 SMART arm_5 635 675 IPR000225 GO:0005515
Csa06g01017 722 SMART arm_5 471 511 IPR000225 GO:0005515
Csa06g01017 722 SMART arm_5 677 717 IPR000225 GO:0005515
Csa06g01017 722 Gene3D - 125 216 IPR036537 GO:0007166
Csa06g01017 722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 422 IPR013083 -
Csa06g01017 722 SUPERFAMILY RING/U-box 348 423 - -
Csa06g01017 722 Pfam Armadillo/beta-catenin-like repeat 554 592 IPR000225 GO:0005515
Csa06g01017 722 Pfam Armadillo/beta-catenin-like repeat 471 510 IPR000225 GO:0005515
Csa06g01017 722 Gene3D - 581 720 IPR011989 -
Csa06g01017 722 SMART Ubox_2 351 414 IPR003613 GO:0004842|GO:0016567
Csa06g01017 722 CDD RING-Ubox_PUB 352 394 IPR045210 -
Csa06g01017 722 Gene3D - 434 579 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01017 Csa-Chr6:8283110 Csa06g01498 Csa-Chr6:12659968 2.58E-157 dispersed
Csa06g01017 Csa-Chr6:8283110 Csa01g02400 Csa-Chr1:21307088 1.19E-165 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01017 - - csv:101214151 1369.76