Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01017 ATGTTTTATAGCAAACCACATCAAAACCATAAAACCCGCGAATGCCGCTTTGTCCATTACTATATTACAAATTCAGTTTCTACACCACCGTTGCTTTTTTTCTTCTTCTTCTTTCTCCCAAAATTTGGTGTCTTTAAATCAAATTCCCCACACCCACTTTTAGAATTCCAAACTCCTACAACTGGGTTGGAGGAAAAACAAGAGGAAGAAGTAGTGGTATATTATTTGGTTATGGAGAGACAATATGGATCAAATAGTTTGAGTCCATGTTCCTCCATTTCTAATGGGGTTCTACAAGAAACTGTAGATGTCACCAAATGTTTGACGGAAGCCAATGAATTAATCGAAGCCATAGGGGCTTTTTCTGGGTTTCGAAAGACCCAATCTAAGGAGTGTTTGAATTTGGTTAGGAGGTTGAAGATGCTTGTTCCTTTGTTGGAGGAGATTAGAGACCTTCACGATATGCTTCCTGCTGAGGCTTTGAGTTCCCATATTTCTCTTTTGAAAGAGGCTCTTGTTTTGGCCAAAAGGTTACTGAAGAATTGCCACAATGGGAGTAAGATTTACCTGGCGTTTGAGAATGAGGCTGTGATGGCAAGGTTTCATGTTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATACCTTATGATGAGCTTGGAGTCTCAGTTGAATTGAAAGAGCAAGTTGAGCTCATGTCGACACAACTCAAAAGAGCAAAGTGTAGAAAAGATACACAAGACATGGAACTAGCAATGGACATGATGGTTGTTTTTTCAAAAAACGACGAGAGAAATGCTGATCCTGTTATACTTGAAAGATTGGCAAATAAATTAGAACTACGTAAAATTGCTGATTTGGAAGCAGAAACTATAGCTGTACAAAAATTAGTTAGACATAGAGGTGTGCCGAATTCTGAAAGTCTCCAGCAAATTATAGACCTTCTACGCAAGTTTAAACAAATTGCAGGTATGGACAATAATGTTGCTCCTGATGGTCCTGTTGTGTCGAAAAGTCTGCAACGGTGTAAATCTACATTAATCCCTCATGAATTCCTCTGTCCCATTACCTTGGAAATCATGACAGATCCTGTCATTGTGGCTACTGGGCAGACTTATGACCGAGAAAGTATACAGAAATGGTTGAATTCTAACCACCGGACCTGCCCGAAAAGCGGACAGACATTAGTGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTCATTTTGCAGTGGTGTCAAAAGAATAACTACGAATTGCCGAAGAAGGAAGTAGTTGCTGGAATGGGAGACACTCCATCTGATCTCGCTGGAGAAATCTCCTCTTTAGTCCACAATCTATCCTCGAGCCAGTTGGATATCCAGAGAGAGGCTATCATCAAGATCCGTGTCCTTTCCAAGGAGAACCCTGAGAACAGAGTTTGGATCGCAAATAGCGGAGTCATCCCTCCGTTGGTTAAGCTTCTCTCCTACCCAGATCTCAATTTCCAAGAACACACGGTAACCGCTCTATTGAACTTGTCTATTGACGATTCGAATAAAAGACTCATAGCGAGAGAAGGAGCAATTCCTGCTATCATAGAAATCCTGCAGCGTGGAACGGAAGAGGCTAAGGAAAACTCTGCTGCTGCCCTGTTTAGCTTGTCAATGTTAGATGAAAACAAGGTTCTGATTGGTTCTCTGAAGGGAATTCCGCCGTTGGTATTACTTCTTCGAGATGGTACAATCCGAGGGAAGAAGGATGCTGCCACTGCACTGTTTAACCTGTCACTGAATCAAGCAAACAAGTCCCGAGCCATCAAAGCTGGCATCATACAGCCCCTTCTCGCTTTGCTGGAGGATAAGAACTTAGGAATGGTTGATGAAGCTTTATCAATCTTGTTACTCCTTGCATCACATCCCGAGGGACGGTCCGAGATCGGCAATAACTCTTTCATTGAAATTCTAGTGAACATCATAATAGACGGGACTCCGAAGAACAAGGAATGTGCTACATCGTTGCTTCTGGAGCTGGGACGAAACAATTCGCCTTCCATTTTGGTTGCACTGCAATTTGGAGTATATGAACATCTGGTAGAGCTAACAAGATGTGGGACAAGTAGAGCCCAGAGAAAAGCAACCTCACTTTTGCAGTATATGAGCAAGTGTGAACACATTCCCTAA 2169 42.14 MFYSKPHQNHKTRECRFVHYYITNSVSTPPLLFFFFFFLPKFGVFKSNSPHPLLEFQTPTTGLEEKQEEEVVVYYLVMERQYGSNSLSPCSSISNGVLQETVDVTKCLTEANELIEAIGAFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHDMLPAEALSSHISLLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHVVYDKLKEALDGIPYDELGVSVELKEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILERLANKLELRKIADLEAETIAVQKLVRHRGVPNSESLQQIIDLLRKFKQIAGMDNNVAPDGPVVSKSLQRCKSTLIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLNSNHRTCPKSGQTLVHLSLAPNYALKNLILQWCQKNNYELPKKEVVAGMGDTPSDLAGEISSLVHNLSSSQLDIQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDSNKRLIAREGAIPAIIEILQRGTEEAKENSAAALFSLSMLDENKVLIGSLKGIPPLVLLLRDGTIRGKKDAATALFNLSLNQANKSRAIKAGIIQPLLALLEDKNLGMVDEALSILLLLASHPEGRSEIGNNSFIEILVNIIIDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLVELTRCGTSRAQRKATSLLQYMSKCEHIP* 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8283110 8287622 - CsaV3_6G010170.1 Csa06g01017 532644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01017 722 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 564 606 IPR000225 GO:0005515
Csa06g01017 722 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 105 719 - -
Csa06g01017 722 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 482 524 IPR000225 GO:0005515
Csa06g01017 722 ProSiteProfiles U-box domain profile. 347 421 IPR003613 GO:0004842|GO:0016567
Csa06g01017 722 PANTHER U BOX DOMAIN-CONTAINING 105 719 - -
Csa06g01017 722 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 523 565 IPR000225 GO:0005515
Csa06g01017 722 Coils Coil 223 243 - -
Csa06g01017 722 SUPERFAMILY ARM repeat 442 716 IPR016024 -
Csa06g01017 722 Pfam U-box domain 348 418 IPR003613 GO:0004842|GO:0016567
Csa06g01017 722 SMART arm_5 512 552 IPR000225 GO:0005515
Csa06g01017 722 SMART arm_5 594 634 IPR000225 GO:0005515
Csa06g01017 722 SMART arm_5 553 593 IPR000225 GO:0005515
Csa06g01017 722 SMART arm_5 635 675 IPR000225 GO:0005515
Csa06g01017 722 SMART arm_5 471 511 IPR000225 GO:0005515
Csa06g01017 722 SMART arm_5 677 717 IPR000225 GO:0005515
Csa06g01017 722 Gene3D - 125 216 IPR036537 GO:0007166
Csa06g01017 722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 422 IPR013083 -
Csa06g01017 722 SUPERFAMILY RING/U-box 348 423 - -
Csa06g01017 722 Pfam Armadillo/beta-catenin-like repeat 554 592 IPR000225 GO:0005515
Csa06g01017 722 Pfam Armadillo/beta-catenin-like repeat 471 510 IPR000225 GO:0005515
Csa06g01017 722 Gene3D - 581 720 IPR011989 -
Csa06g01017 722 SMART Ubox_2 351 414 IPR003613 GO:0004842|GO:0016567
Csa06g01017 722 CDD RING-Ubox_PUB 352 394 IPR045210 -
Csa06g01017 722 Gene3D - 434 579 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01017 - - - csv:101214151 1369.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01017 Csa-Chr6:8283110 Csa06g01498 Csa-Chr6:12659968 2.58E-157 dispersed
Csa06g01017 Csa-Chr6:8283110 Csa01g02400 Csa-Chr1:21307088 1.19E-165 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g03801 . 1 1044 U-box Gene Family AT5G15400 75.9 0.0e+00 1568.9
Csa02g01443 . 196 842 U-box Gene Family AT2G23140 66.2 9.2e-122 434.5
Csa02g01820 . 1 776 U-box Gene Family AT1G24330 59.3 1.8e-244 842.4
Csa05g02223 . 1 758 U-box Gene Family AT1G24330 58.2 1.6e-229 792.7
Csa02g01820 . 1 775 U-box Gene Family AT1G67530 59.1 1.2e-240 829.7
Csa05g02223 . 1 758 U-box Gene Family AT1G67530 57.0 1.7e-223 772.7
Csa06g03568 . 1 362 U-box Gene Family AT4G21350 62.1 2.3e-120 429.1
Csa03g02707 . 135 462 U-box Gene Family AT3G07360 54.4 1.1e-78 290.4
Csa05g01046 . 269 456 U-box Gene Family AT1G71020 71.4 9.2e-74 274.6
Csa05g02038 . 246 457 U-box Gene Family AT1G71020 54.5 8.1e-54 208.4
Csa01g02400 CCT 259 428 U-box Gene Family AT1G71020 57.8 3.9e-48 189.5
Csa05g02787 . 246 413 U-box Gene Family AT1G71020 58.5 5.1e-48 189.1
Csa06g01498 CCT 254 423 U-box Gene Family AT1G71020 55.4 1.4e-45 181.0
Csa05g01046 . 16 660 U-box Gene Family AT1G23030 56.7 1.0e-109 394.4
Csa01g02400 CCT 94 632 U-box Gene Family AT2G28830 53.4 9.6e-102 367.9
Csa06g01498 CCT 93 633 U-box Gene Family AT2G28830 50.9 1.2e-99 360.9
Csa01g02400 CCT 1 642 U-box Gene Family AT3G46510 72.4 3.2e-178 622.1
Csa06g01498 CCT 11 647 U-box Gene Family AT3G46510 65.8 4.8e-158 555.1
Csa05g02787 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Csa05g02787 . 9 619 U-box Gene Family AT3G54850 69.6 1.7e-168 589.7
Csa01g02400 CCT 9 631 U-box Gene Family AT3G54850 59.5 1.4e-122 437.2
Csa06g01498 CCT 13 626 U-box Gene Family AT3G54850 57.5 1.3e-115 414.1
Csa06g01017 . 169 721 U-box Gene Family AT5G42340 66.0 4.6e-124 442.2
Csa04g01681 . 9 671 U-box Gene Family AT5G01830 57.7 5.0e-195 677.9
Csa01g02298 . 1 714 U-box Gene Family AT1G29340 67.2 2.0e-245 845.5
Csa03g02112 . 27 443 U-box Gene Family AT5G37490 52.0 3.5e-112 402.1
Csa04g01150 . 4 423 U-box Gene Family AT3G52450 50.6 1.4e-113 406.8
Csa03g03495 . 1 404 U-box Gene Family AT2G35930 55.4 6.6e-121 431.0
Csa06g02471 . 12 412 U-box Gene Family AT2G35930 52.0 4.9e-116 414.8
Csa03g01844 . 9 424 U-box Gene Family AT3G19380 64.2 2.1e-146 515.8
Csa03g01844 . 1 424 U-box Gene Family AT1G49780 64.3 6.2e-151 530.8
Csa06g02795 . 1 403 U-box Gene Family AT5G64660 55.7 5.1e-121 431.4
Csa06g02795 . 1 403 U-box Gene Family AT5G09800 50.9 5.0e-105 378.3
Csa04g02494 CCT 1 454 U-box Gene Family AT3G49810 63.5 6.8e-156 547.4
Csa02g01879 CCT 24 479 U-box Gene Family AT3G49810 62.3 1.0e-151 533.5
Csa02g01879 CCT 24 479 U-box Gene Family AT5G65920 62.5 2.5e-150 528.9
Csa04g02494 CCT 1 454 U-box Gene Family AT5G65920 62.4 1.2e-149 526.6
Csa03g00887 CCT 1 874 U-box Gene Family AT2G45910 51.1 1.1e-228 790.0
Csa02g00037 . 11 733 U-box Gene Family AT2G19410 50.7 4.6e-208 721.5
Csa05g00483 . 24 807 U-box Gene Family AT4G25160 52.6 4.4e-225 778.1
Csa05g02927 . 39 555 U-box Gene Family AT5G40140 55.6 5.9e-93 338.6
Csa01g00180 . 27 537 U-box Gene Family AT5G40140 51.9 6.0e-69 258.8
Csa01g00824 . 29 498 U-box Gene Family AT5G40140 50.6 1.9e-54 210.7
Csa06g01954 . 4 815 U-box Gene Family AT1G76390 60.4 1.9e-265 912.1
Csa06g01954 . 13 815 U-box Gene Family AT1G20780 61.0 5.0e-274 940.6
Csa02g01820 . 1 779 U-box Gene Family AT1G27910 62.4 2.7e-269 924.9
Csa05g02223 . 1 768 U-box Gene Family AT1G27910 63.3 1.5e-264 909.1
Csa06g03023 . 1 593 U-box Gene Family AT5G67530 74.6 4.0e-260 894.0
Csa03g03444 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Csa05g00483 . 25 807 U-box Gene Family AT5G61550 50.7 7.7e-225 777.3
Csa03g01174 . 4 489 U-box Gene Family AT1G04510 73.9 9.3e-205 709.9
Csa03g01174 . 4 458 U-box Gene Family AT2G33340 72.6 6.4e-192 667.2
Csa03g02706 . 14 280 U-box Gene Family AT3G07370 66.7 3.9e-101 364.8
Csa03g03801 . 1 1044 U-box Gene Family AT5G15400 75.9 0.0e+00 1568.9
Csa02g01443 . 196 842 U-box Gene Family AT2G23140 66.2 9.2e-122 434.5
Csa02g01820 . 1 776 U-box Gene Family AT1G24330 59.3 1.8e-244 842.4
Csa05g02223 . 1 758 U-box Gene Family AT1G24330 58.2 1.6e-229 792.7
Csa02g01820 . 1 775 U-box Gene Family AT1G67530 59.1 1.2e-240 829.7
Csa05g02223 . 1 758 U-box Gene Family AT1G67530 57.0 1.7e-223 772.7
Csa06g03568 . 1 362 U-box Gene Family AT4G21350 62.1 2.3e-120 429.1
Csa03g02707 . 135 462 U-box Gene Family AT3G07360 54.4 1.1e-78 290.4
Csa05g01046 . 269 456 U-box Gene Family AT1G71020 71.4 9.2e-74 274.6
Csa05g02038 . 246 457 U-box Gene Family AT1G71020 54.5 8.1e-54 208.4
Csa01g02400 CCT 259 428 U-box Gene Family AT1G71020 57.8 3.9e-48 189.5
Csa05g02787 . 246 413 U-box Gene Family AT1G71020 58.5 5.1e-48 189.1
Csa06g01498 CCT 254 423 U-box Gene Family AT1G71020 55.4 1.4e-45 181.0
Csa05g01046 . 16 660 U-box Gene Family AT1G23030 56.7 1.0e-109 394.4
Csa01g02400 CCT 94 632 U-box Gene Family AT2G28830 53.4 9.6e-102 367.9
Csa06g01498 CCT 93 633 U-box Gene Family AT2G28830 50.9 1.2e-99 360.9
Csa01g02400 CCT 1 642 U-box Gene Family AT3G46510 72.4 3.2e-178 622.1
Csa06g01498 CCT 11 647 U-box Gene Family AT3G46510 65.8 4.8e-158 555.1
Csa05g02787 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Csa05g02787 . 9 619 U-box Gene Family AT3G54850 69.6 1.7e-168 589.7
Csa01g02400 CCT 9 631 U-box Gene Family AT3G54850 59.5 1.4e-122 437.2
Csa06g01498 CCT 13 626 U-box Gene Family AT3G54850 57.5 1.3e-115 414.1
Csa06g01017 . 169 721 U-box Gene Family AT5G42340 66.0 4.6e-124 442.2
Csa04g01681 . 9 671 U-box Gene Family AT5G01830 57.7 5.0e-195 677.9
Csa01g02298 . 1 714 U-box Gene Family AT1G29340 67.2 2.0e-245 845.5
Csa03g02112 . 27 443 U-box Gene Family AT5G37490 52.0 3.5e-112 402.1
Csa04g01150 . 4 423 U-box Gene Family AT3G52450 50.6 1.4e-113 406.8
Csa03g03495 . 1 404 U-box Gene Family AT2G35930 55.4 6.6e-121 431.0
Csa06g02471 . 12 412 U-box Gene Family AT2G35930 52.0 4.9e-116 414.8
Csa03g01844 . 9 424 U-box Gene Family AT3G19380 64.2 2.1e-146 515.8
Csa03g01844 . 1 424 U-box Gene Family AT1G49780 64.3 6.2e-151 530.8
Csa06g02795 . 1 403 U-box Gene Family AT5G64660 55.7 5.1e-121 431.4
Csa06g02795 . 1 403 U-box Gene Family AT5G09800 50.9 5.0e-105 378.3
Csa04g02494 CCT 1 454 U-box Gene Family AT3G49810 63.5 6.8e-156 547.4
Csa02g01879 CCT 24 479 U-box Gene Family AT3G49810 62.3 1.0e-151 533.5
Csa02g01879 CCT 24 479 U-box Gene Family AT5G65920 62.5 2.5e-150 528.9
Csa04g02494 CCT 1 454 U-box Gene Family AT5G65920 62.4 1.2e-149 526.6
Csa03g00887 CCT 1 874 U-box Gene Family AT2G45910 51.1 1.1e-228 790.0
Csa02g00037 . 11 733 U-box Gene Family AT2G19410 50.7 4.6e-208 721.5
Csa05g00483 . 24 807 U-box Gene Family AT4G25160 52.6 4.4e-225 778.1
Csa05g02927 . 39 555 U-box Gene Family AT5G40140 55.6 5.9e-93 338.6
Csa01g00180 . 27 537 U-box Gene Family AT5G40140 51.9 6.0e-69 258.8
Csa01g00824 . 29 498 U-box Gene Family AT5G40140 50.6 1.9e-54 210.7
Csa06g01954 . 4 815 U-box Gene Family AT1G76390 60.4 1.9e-265 912.1
Csa06g01954 . 13 815 U-box Gene Family AT1G20780 61.0 5.0e-274 940.6
Csa02g01820 . 1 779 U-box Gene Family AT1G27910 62.4 2.7e-269 924.9
Csa05g02223 . 1 768 U-box Gene Family AT1G27910 63.3 1.5e-264 909.1
Csa06g03023 . 1 593 U-box Gene Family AT5G67530 74.6 4.0e-260 894.0
Csa03g03444 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Csa05g00483 . 25 807 U-box Gene Family AT5G61550 50.7 7.7e-225 777.3
Csa03g01174 . 4 489 U-box Gene Family AT1G04510 73.9 9.3e-205 709.9
Csa03g01174 . 4 458 U-box Gene Family AT2G33340 72.6 6.4e-192 667.2
Csa03g02706 . 14 280 U-box Gene Family AT3G07370 66.7 3.9e-101 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007785 2 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 2 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01017 Csa_Chr06 FPKM 0.0 0.0 0.135252 0.064839 0.253681 0.183798 0.129704 0.370692 0.280801 0.149599
Csa06g01017 Csa_Chr00 FPKM 29.826216 31.892586 1.731204 2.315207 0.925199 0.800121 0.950162 8.566293 8.630257 10.911194
Csa06g01017 Csa_Chr00 FPKM 0.0 0.0 0.0 0.0 0.292389 0.0 0.0 0.328928 0.262865 0.16023