Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01045 ATGAGGTGGAATACATTCTACACCAAAGCTTCTAATCTTTTTCATGATCATCCTTCCATCTCTAAGCTTCTCATTGTTTTCACTCTCAGTGGAGGTGGACTGGTAGCAACTACTAATGGCAGATCTCTGTATCACTCTGTGTATGCCGATGCAGTCCAACAAGATGGTTACTGGAAGAAGAAGAAAGTAGTGGTGCTTGGAACAGGATGGGCTGGCACCAGTTTTTTGAAGAATCTCAAGAGTTCATCTTATGATGTTCATGTTATTTCTCCTCATAATTACTTTGCTTTTACCCCTTTGCTTCCTAGTATCACGTGTGGCACGGTTGAAGCTCGCAGCATTGTTGAACCAATTCGTAGTATTACAAAGAAGAAAGGTCTGGATATTGAATTTAGGGAAGCTGAGTGCTATAAGATTGATGCAGAGAAAAAGATGGTATTCTGTAGATCAAGTCAAGACACAAATTTGGGTGGCAGAGAAGAATTTTCTGTTGATTATGACTATCTGATTATAGCCATGGGAGCCAAATCCAACACTTTCAACACACCCGGAGTTGAGGAAAATGCTCACTTCTTGAAGGGAGTGGAAGATGCTCAGAGGATTCGTCAGACCGTAATCGATTGTTTCGAGAGAGCCAGCCTTCCAAATCTAAGTGAAGAAGAGAAGAAGAGAACTCTTCACTTTGTAATAGTTGGAGGTGGTCCAACTGGAGTGGAATTTGCAGCAGAGCTTCATGACTTTGCAGTTGAGGATTTAGCAGCATTGTATCCTTCATTGAAAGACTACGTGAAAATAACCCTCTTAGAGGCAGGAGATCATATTTTGAACATGTTTGACAAGAGAATTACTGCCTTTGCTGAAGAAAAATTTCAAAGAGATGGGATTGAACTAAAAACTGGTTCCATGGTCGTAAAAGTAACTGACAAGGAAATCTCCACAAAAGAAAGCGCAACCGGTGAATTTGTATCCATTCCTTATGGAATGGTTGTCTGGTCTACCGGCATAGGCCCTCGTCCTCAAGTCATTGATTTCATGAATCAGATTGGTCAGACTAACAGAAGAGCTTTGGCAACTGATGAGTGGCTAAGGGTTGAAGGATGTGATGGTGTCTACGCTCTTGGTGATTGTGCCACTGTAAATCAAAGAAGAGTCATGGAAGATATTTCAGTAATATTCAGTAAGGCAGACAAGGATAAGTCAGGAGCTTTAGCCCTGCAAGAGTTTCAAGAAGTGGTAGGTGACATTTGTGAGAGGTACCCTCAAGTTGGGATCTATCTGAAGAAGAAGCAGATGAAGAACTTTGCAGCTTTGTTGAAGAAGACACAATCGGACACACAGAAACAGTCGACTGAACTGGATATTGAAAGCTTTAAGTCCTTACTTTCTGAAGTTGATTCTCAGATGAAAAATCTCCCTGCTACTGCTCAAGTTGCTGCTCAACAAGGTGAATATCTTGCAAGCTGCTTCAGCCGGATGGATCAATGTGAAAAGTACCCTGAAGGCCCTCTCCGATTTCGAGGGACAGGACGCCACAGGTTTCATCCCTTCAGGTACAAGCATTTTGGGCAGTTTGCTCCTCTTGGGGGAGAACAAACTGCAGCTCAACTACCTGGAGATTGGATCTCAATTGGTCATAGCACCCAGTGGCTTTGGTATTCTGTTTATACCAGCAAGCTAGTAAGTTGGCGCACAAGGATTCTGGTCATTTCAGATTGGGGTAGAAGATTTGTGTTTGGCAGGGATTCAAGCAGAATCTGA 1758 42.55 MRWNTFYTKASNLFHDHPSISKLLIVFTLSGGGLVATTNGRSLYHSVYADAVQQDGYWKKKKVVVLGTGWAGTSFLKNLKSSSYDVHVISPHNYFAFTPLLPSITCGTVEARSIVEPIRSITKKKGLDIEFREAECYKIDAEKKMVFCRSSQDTNLGGREEFSVDYDYLIIAMGAKSNTFNTPGVEENAHFLKGVEDAQRIRQTVIDCFERASLPNLSEEEKKRTLHFVIVGGGPTGVEFAAELHDFAVEDLAALYPSLKDYVKITLLEAGDHILNMFDKRITAFAEEKFQRDGIELKTGSMVVKVTDKEISTKESATGEFVSIPYGMVVWSTGIGPRPQVIDFMNQIGQTNRRALATDEWLRVEGCDGVYALGDCATVNQRRVMEDISVIFSKADKDKSGALALQEFQEVVGDICERYPQVGIYLKKKQMKNFAALLKKTQSDTQKQSTELDIESFKSLLSEVDSQMKNLPATAQVAAQQGEYLASCFSRMDQCEKYPEGPLRFRGTGRHRFHPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSVYTSKLVSWRTRILVISDWGRRFVFGRDSSRI* 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8563267 8566243 - CsaV3_6G012430.1 Csa06g01045 532672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01045 585 SUPERFAMILY EF-hand 343 471 IPR011992 -
Csa06g01045 585 SUPERFAMILY FAD/NAD(P)-binding domain 60 279 IPR036188 -
Csa06g01045 585 PANTHER - 5 585 - -
Csa06g01045 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 62 84 - -
Csa06g01045 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 223 247 - -
Csa06g01045 585 PRINTS Pyridine nucleotide disulphide reductase class-II signature 365 383 - -
Csa06g01045 585 SUPERFAMILY FAD/NAD(P)-binding domain 221 380 IPR036188 -
Csa06g01045 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 63 82 - -
Csa06g01045 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 166 184 - -
Csa06g01045 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 227 245 - -
Csa06g01045 585 PRINTS FAD-dependent pyridine nucleotide reductase signature 355 377 - -
Csa06g01045 585 Pfam Pyridine nucleotide-disulphide oxidoreductase 61 387 IPR023753 GO:0016491
Csa06g01045 585 ProSitePatterns EF-hand calcium-binding domain. 396 408 IPR018247 -
Csa06g01045 585 Gene3D - 432 584 - -
Csa06g01045 585 Gene3D - 52 431 - -
Csa06g01045 585 PANTHER NADH DEHYDROGENASE 5 585 IPR045024 GO:0003954|GO:0006116
Csa06g01045 585 ProSiteProfiles EF-hand calcium-binding domain profile. 383 418 IPR002048 GO:0005509
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02701 Csa-Chr5:27832430 Csa06g01045 Csa-Chr6:8563267 7.78E-06 dispersed
Csa06g01045 Csa-Chr6:8563267 Csa07g00414 Csa-Chr7:3027034 0 dispersed
Csa06g01045 Csa-Chr6:8563267 Csa01g01178 Csa-Chr1:7297188 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01045 K03885 - csv:101209855 1182.55