Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01060 ATGGATTTCTCTCTCAAGTCTTTCAAATCTCATCCTTCTTACAAATATGTTAGGAAGCTTTCTGGGGCAGATGCTACTCAAGACCACGAACACCTTCCTATTCTTTCTGATCACCAACACTCCATAATGGCAGTTTCCGATTCATCTGATCGGAAAGAGGTTATCGTCAAGGTCGATGAGGCTGATGCTTCCACTTTAAGAGCTACGGACTTGGTAAACGGAAGTGGCACGATTTGGCGGGAGTCCAGCTATGATTTCTGGAATGATAGTGATAATAGACGGAATTATGGCGAGGGTGGTGCTAAAACTACTGATGATTTTGAGTTTAGGCAACATAGGAAGGATGTGGAAGATCCGCCCTCCAAGCTTATCGGGCAGTTTCTTCACAAACAGAAGGCGTCGGGAGAGATGTCTTTAGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTCCGCTTTCTACGGTGGCGGAATCTCCGATGCGACGGAGTTCGAGAGAGTTGAAGGTTTCCTTCGAGTCTATTTCAGAAATATCTGAAAACGATTCCATGAGAAGACGGCACAGAGACTCGCCACTCGATGAAGAACATAGAGGTCAGCAACCGCGGCAGTGTGATCGTCGTGCGCATGGCAGCAATGGTGAAGATGATGGTGCTGCTGAGGTATTGAGATGCTCATCCAATTCTTTCTTTCAAAGAGATGTATCGTTCCAGAGGAAATCTAGCTTGCTTAGGGCTAAAACTAAGTCTAGATTACTGGATCCACCCGAACACCAAGACCGGAGGTCAGGACGTGTACCAAAATCAGGACAAGTTCGCTCTGGTTTAATCTCAAAAGCCTTAGATGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCTGATGAGTATAAGAAGGCCAATTTAGGTGTTCTGACTCTGTTACAATGGGCGAGTTTGATTCTGATAATAGCAGCATTGGTTTGCACTTTAACAATTCGTTACTGGAGGAGAAAGAAACTATGGAAGCTTGAAGTATGGAAATGGGAGGTTATGATTCTTGTTCTAATATGTGGCAGACTTGTTTCTGGTTGGGGGATTAGGGTAATCGTCTTCTTTATTGAAAGAAACTTTCTACTTCGTAAGAGGGTTCTATACTTTGTTTATGGAGTCAGAAAGGCGGTCCAGAATTGTCTTTGGTTAGGTCTAGTTTTAATTGCTTGGAACTTCCTGTTTGATGACAAAGTTCAAAGAGAGGTAAAGAGCAATGCCTTAGAATATGTGACCAAAGTATTGGTATGTCTTCTTGTAAGCACTTTGGTTTGGCTAGTAAAAACACTGATGGTGAAGGTTTTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAAGATGCATTGTTTAACCAATATGTAATTGAGACACTGTCAGGTCCTCCATTGATAGAGATTCAAAAGAATGAGGAAGAAGAAGAGAGGCTTGCTGAAGAGGTTATAAAGTTACAGAATGCAGGGGCTACCATCCCTCCTGATTTAAAGGCAACTGCCTTTTCTACAGCTCAAAAGGGTGGGAGGGTGATAGGTAGTGGAGGGTTGCAAAAAAGTCCTCGTGGAAGAAGTGGCAAGTTATCTAGGACACTGTCGAAAAAGGGCGGCGATGAGGGTATAACAATTGATCACTTGCATAAGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGATTGATGAACATTGTTAGACATGGGACCCTTTCAACTTTAGATGAACAGATTAAAGATACAGCTCATGAGGACGAATCAACCACAGAGATTAAGAGTGAATATGAGGCAAAAGTTGCTGCGAAGAAGATTTTTCTGAACGTGGCTAGAAATGGTTCTAAATATATCTACCTAGAGGACTTGATGCGTTTCATGGAAAAAGATGAGGCTTCAAAAACCATGGGTCTCTTTGAAGGAGCATGTGAGAGTAGAAAAATAAGCAAATCATCCTTGAAAAACTGGGTGGTTAATGCCTTTAGAGAACGAAGGGCTCTAGCTTTGACATTGAACGATACCAAAACAGCAGTGAACAAACTTCACCGCATGACTGTTTTTGAATCAATCATCTTCTTATTCGTGATGCATCCATTTGACGTCGGAGACCGATGTGAAATTGATGGTGTGCAGATGATTGTTGAAGAAATGAACATTTTGACTACTATTTTTCTAAGATACGACAACCAGAAGATCATATTTCCGAACAGCGTTCTCGCAACAAAGGCTATCCACAACTTCTATCGTAGTCCTGACATGGGAGATGGTATAGAATTCTGTCTTCACATATCTACTCCACCTGAGAAAATAGCTATCATGAGACAAAGAATAATAAGTTACATTGAGGGCAAGAAAGAGCATTGGTGTCCTGCGCCAATGATTGTCCTAAAGGATGTAGAAGAGTTAAATAGAATGAGAATAGCAATATGGCTTACTCATAGAATGAACCATCAAGACATGGGGGAGAGGTGGACAAGGAGAGCTCTTTTGGTCGAAGAACTTGTTAAAATTTTCCAAGAGCTCGATTTGCAATACCGTCTCCTACCACTTGATATCAATGTTCGCTCCTTGCCTCCTGTGAACTCTACTAATCTTCCTCAAAGGTAA 2640 41.78 MDFSLKSFKSHPSYKYVRKLSGADATQDHEHLPILSDHQHSIMAVSDSSDRKEVIVKVDEADASTLRATDLVNGSGTIWRESSYDFWNDSDNRRNYGEGGAKTTDDFEFRQHRKDVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTPLSTVAESPMRRSSRELKVSFESISEISENDSMRRRHRDSPLDEEHRGQQPRQCDRRAHGSNGEDDGAAEVLRCSSNSFFQRDVSFQRKSSLLRAKTKSRLLDPPEHQDRRSGRVPKSGQVRSGLISKALDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALVCTLTIRYWRRKKLWKLEVWKWEVMILVLICGRLVSGWGIRVIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVIKLQNAGATIPPDLKATAFSTAQKGGRVIGSGGLQKSPRGRSGKLSRTLSKKGGDEGITIDHLHKLSPKNVSAWNMKRLMNIVRHGTLSTLDEQIKDTAHEDESTTEIKSEYEAKVAAKKIFLNVARNGSKYIYLEDLMRFMEKDEASKTMGLFEGACESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMTVFESIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLRYDNQKIIFPNSVLATKAIHNFYRSPDMGDGIEFCLHISTPPEKIAIMRQRIISYIEGKKEHWCPAPMIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTNLPQR* 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8687901 8692728 + CsaV3_6G012580.1 Csa06g01060 532687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01060 879 MobiDBLite consensus disorder prediction 250 274 - -
Csa06g01060 879 PIRSF Memb_At2g17000 695 879 IPR016688 -
Csa06g01060 879 PIRSF Memb_At2g17000 37 698 IPR016688 -
Csa06g01060 879 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 696 876 IPR016688 -
Csa06g01060 879 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 6 695 IPR016688 -
Csa06g01060 879 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 696 876 - -
Csa06g01060 879 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 6 695 - -
Csa06g01060 879 SUPERFAMILY Sm-like ribonucleoproteins 698 758 IPR010920 -
Csa06g01060 879 MobiDBLite consensus disorder prediction 181 219 - -
Csa06g01060 879 Gene3D - 709 758 IPR023408 -
Csa06g01060 879 MobiDBLite consensus disorder prediction 524 549 - -
Csa06g01060 879 Pfam Mechanosensitive ion channel 702 853 IPR006685 GO:0016020|GO:0055085
Csa06g01060 879 MobiDBLite consensus disorder prediction 252 269 - -
Csa06g01060 879 MobiDBLite consensus disorder prediction 150 221 - -
Csa06g01060 879 Coils Coil 482 505 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01060 Csa-Chr6:8687901 Csa07g00130 Csa-Chr7:1148400 0 dispersed
Csa06g01060 Csa-Chr6:8687901 Csa01g02964 Csa-Chr1:25997051 8.72E-163 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01060 K22048 - csv:101210264 1680.61