Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g01060 | ATGGATTTCTCTCTCAAGTCTTTCAAATCTCATCCTTCTTACAAATATGTTAGGAAGCTTTCTGGGGCAGATGCTACTCAAGACCACGAACACCTTCCTATTCTTTCTGATCACCAACACTCCATAATGGCAGTTTCCGATTCATCTGATCGGAAAGAGGTTATCGTCAAGGTCGATGAGGCTGATGCTTCCACTTTAAGAGCTACGGACTTGGTAAACGGAAGTGGCACGATTTGGCGGGAGTCCAGCTATGATTTCTGGAATGATAGTGATAATAGACGGAATTATGGCGAGGGTGGTGCTAAAACTACTGATGATTTTGAGTTTAGGCAACATAGGAAGGATGTGGAAGATCCGCCCTCCAAGCTTATCGGGCAGTTTCTTCACAAACAGAAGGCGTCGGGAGAGATGTCTTTAGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTCCGCTTTCTACGGTGGCGGAATCTCCGATGCGACGGAGTTCGAGAGAGTTGAAGGTTTCCTTCGAGTCTATTTCAGAAATATCTGAAAACGATTCCATGAGAAGACGGCACAGAGACTCGCCACTCGATGAAGAACATAGAGGTCAGCAACCGCGGCAGTGTGATCGTCGTGCGCATGGCAGCAATGGTGAAGATGATGGTGCTGCTGAGGTATTGAGATGCTCATCCAATTCTTTCTTTCAAAGAGATGTATCGTTCCAGAGGAAATCTAGCTTGCTTAGGGCTAAAACTAAGTCTAGATTACTGGATCCACCCGAACACCAAGACCGGAGGTCAGGACGTGTACCAAAATCAGGACAAGTTCGCTCTGGTTTAATCTCAAAAGCCTTAGATGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCTGATGAGTATAAGAAGGCCAATTTAGGTGTTCTGACTCTGTTACAATGGGCGAGTTTGATTCTGATAATAGCAGCATTGGTTTGCACTTTAACAATTCGTTACTGGAGGAGAAAGAAACTATGGAAGCTTGAAGTATGGAAATGGGAGGTTATGATTCTTGTTCTAATATGTGGCAGACTTGTTTCTGGTTGGGGGATTAGGGTAATCGTCTTCTTTATTGAAAGAAACTTTCTACTTCGTAAGAGGGTTCTATACTTTGTTTATGGAGTCAGAAAGGCGGTCCAGAATTGTCTTTGGTTAGGTCTAGTTTTAATTGCTTGGAACTTCCTGTTTGATGACAAAGTTCAAAGAGAGGTAAAGAGCAATGCCTTAGAATATGTGACCAAAGTATTGGTATGTCTTCTTGTAAGCACTTTGGTTTGGCTAGTAAAAACACTGATGGTGAAGGTTTTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAAGATGCATTGTTTAACCAATATGTAATTGAGACACTGTCAGGTCCTCCATTGATAGAGATTCAAAAGAATGAGGAAGAAGAAGAGAGGCTTGCTGAAGAGGTTATAAAGTTACAGAATGCAGGGGCTACCATCCCTCCTGATTTAAAGGCAACTGCCTTTTCTACAGCTCAAAAGGGTGGGAGGGTGATAGGTAGTGGAGGGTTGCAAAAAAGTCCTCGTGGAAGAAGTGGCAAGTTATCTAGGACACTGTCGAAAAAGGGCGGCGATGAGGGTATAACAATTGATCACTTGCATAAGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGATTGATGAACATTGTTAGACATGGGACCCTTTCAACTTTAGATGAACAGATTAAAGATACAGCTCATGAGGACGAATCAACCACAGAGATTAAGAGTGAATATGAGGCAAAAGTTGCTGCGAAGAAGATTTTTCTGAACGTGGCTAGAAATGGTTCTAAATATATCTACCTAGAGGACTTGATGCGTTTCATGGAAAAAGATGAGGCTTCAAAAACCATGGGTCTCTTTGAAGGAGCATGTGAGAGTAGAAAAATAAGCAAATCATCCTTGAAAAACTGGGTGGTTAATGCCTTTAGAGAACGAAGGGCTCTAGCTTTGACATTGAACGATACCAAAACAGCAGTGAACAAACTTCACCGCATGACTGTTTTTGAATCAATCATCTTCTTATTCGTGATGCATCCATTTGACGTCGGAGACCGATGTGAAATTGATGGTGTGCAGATGATTGTTGAAGAAATGAACATTTTGACTACTATTTTTCTAAGATACGACAACCAGAAGATCATATTTCCGAACAGCGTTCTCGCAACAAAGGCTATCCACAACTTCTATCGTAGTCCTGACATGGGAGATGGTATAGAATTCTGTCTTCACATATCTACTCCACCTGAGAAAATAGCTATCATGAGACAAAGAATAATAAGTTACATTGAGGGCAAGAAAGAGCATTGGTGTCCTGCGCCAATGATTGTCCTAAAGGATGTAGAAGAGTTAAATAGAATGAGAATAGCAATATGGCTTACTCATAGAATGAACCATCAAGACATGGGGGAGAGGTGGACAAGGAGAGCTCTTTTGGTCGAAGAACTTGTTAAAATTTTCCAAGAGCTCGATTTGCAATACCGTCTCCTACCACTTGATATCAATGTTCGCTCCTTGCCTCCTGTGAACTCTACTAATCTTCCTCAAAGGTAA | 2640 | 41.78 | MDFSLKSFKSHPSYKYVRKLSGADATQDHEHLPILSDHQHSIMAVSDSSDRKEVIVKVDEADASTLRATDLVNGSGTIWRESSYDFWNDSDNRRNYGEGGAKTTDDFEFRQHRKDVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTPLSTVAESPMRRSSRELKVSFESISEISENDSMRRRHRDSPLDEEHRGQQPRQCDRRAHGSNGEDDGAAEVLRCSSNSFFQRDVSFQRKSSLLRAKTKSRLLDPPEHQDRRSGRVPKSGQVRSGLISKALDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALVCTLTIRYWRRKKLWKLEVWKWEVMILVLICGRLVSGWGIRVIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVIKLQNAGATIPPDLKATAFSTAQKGGRVIGSGGLQKSPRGRSGKLSRTLSKKGGDEGITIDHLHKLSPKNVSAWNMKRLMNIVRHGTLSTLDEQIKDTAHEDESTTEIKSEYEAKVAAKKIFLNVARNGSKYIYLEDLMRFMEKDEASKTMGLFEGACESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMTVFESIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLRYDNQKIIFPNSVLATKAIHNFYRSPDMGDGIEFCLHISTPPEKIAIMRQRIISYIEGKKEHWCPAPMIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTNLPQR* | 880 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 8687901 | 8692728 | + | CsaV3_6G012580.1 | Csa06g01060 | 532687 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g01060 | 879 | MobiDBLite | consensus disorder prediction | 250 | 274 | - | - | |
Csa06g01060 | 879 | PIRSF | Memb_At2g17000 | 695 | 879 | IPR016688 | - | |
Csa06g01060 | 879 | PIRSF | Memb_At2g17000 | 37 | 698 | IPR016688 | - | |
Csa06g01060 | 879 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 696 | 876 | IPR016688 | - | |
Csa06g01060 | 879 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 6 | 695 | IPR016688 | - | |
Csa06g01060 | 879 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN | 696 | 876 | - | - | |
Csa06g01060 | 879 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN | 6 | 695 | - | - | |
Csa06g01060 | 879 | SUPERFAMILY | Sm-like ribonucleoproteins | 698 | 758 | IPR010920 | - | |
Csa06g01060 | 879 | MobiDBLite | consensus disorder prediction | 181 | 219 | - | - | |
Csa06g01060 | 879 | Gene3D | - | 709 | 758 | IPR023408 | - | |
Csa06g01060 | 879 | MobiDBLite | consensus disorder prediction | 524 | 549 | - | - | |
Csa06g01060 | 879 | Pfam | Mechanosensitive ion channel | 702 | 853 | IPR006685 | GO:0016020|GO:0055085 | |
Csa06g01060 | 879 | MobiDBLite | consensus disorder prediction | 252 | 269 | - | - | |
Csa06g01060 | 879 | MobiDBLite | consensus disorder prediction | 150 | 221 | - | - | |
Csa06g01060 | 879 | Coils | Coil | 482 | 505 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa06g01060 | Csa-Chr6:8687901 | Csa07g00130 | Csa-Chr7:1148400 | 0 | dispersed | |
Csa06g01060 | Csa-Chr6:8687901 | Csa01g02964 | Csa-Chr1:25997051 | 8.72E-163 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g01060 | K22048 | - | csv:101210264 | 1680.61 |