Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01060 ATGGATTTCTCTCTCAAGTCTTTCAAATCTCATCCTTCTTACAAATATGTTAGGAAGCTTTCTGGGGCAGATGCTACTCAAGACCACGAACACCTTCCTATTCTTTCTGATCACCAACACTCCATAATGGCAGTTTCCGATTCATCTGATCGGAAAGAGGTTATCGTCAAGGTCGATGAGGCTGATGCTTCCACTTTAAGAGCTACGGACTTGGTAAACGGAAGTGGCACGATTTGGCGGGAGTCCAGCTATGATTTCTGGAATGATAGTGATAATAGACGGAATTATGGCGAGGGTGGTGCTAAAACTACTGATGATTTTGAGTTTAGGCAACATAGGAAGGATGTGGAAGATCCGCCCTCCAAGCTTATCGGGCAGTTTCTTCACAAACAGAAGGCGTCGGGAGAGATGTCTTTAGATATGGATATGGAAATGCTGGAACTACCACAGGATAAGACTCCGCTTTCTACGGTGGCGGAATCTCCGATGCGACGGAGTTCGAGAGAGTTGAAGGTTTCCTTCGAGTCTATTTCAGAAATATCTGAAAACGATTCCATGAGAAGACGGCACAGAGACTCGCCACTCGATGAAGAACATAGAGGTCAGCAACCGCGGCAGTGTGATCGTCGTGCGCATGGCAGCAATGGTGAAGATGATGGTGCTGCTGAGGTATTGAGATGCTCATCCAATTCTTTCTTTCAAAGAGATGTATCGTTCCAGAGGAAATCTAGCTTGCTTAGGGCTAAAACTAAGTCTAGATTACTGGATCCACCCGAACACCAAGACCGGAGGTCAGGACGTGTACCAAAATCAGGACAAGTTCGCTCTGGTTTAATCTCAAAAGCCTTAGATGAGGAAGACGATGATCCATTCTTGGAAGAAGATCTTCCTGATGAGTATAAGAAGGCCAATTTAGGTGTTCTGACTCTGTTACAATGGGCGAGTTTGATTCTGATAATAGCAGCATTGGTTTGCACTTTAACAATTCGTTACTGGAGGAGAAAGAAACTATGGAAGCTTGAAGTATGGAAATGGGAGGTTATGATTCTTGTTCTAATATGTGGCAGACTTGTTTCTGGTTGGGGGATTAGGGTAATCGTCTTCTTTATTGAAAGAAACTTTCTACTTCGTAAGAGGGTTCTATACTTTGTTTATGGAGTCAGAAAGGCGGTCCAGAATTGTCTTTGGTTAGGTCTAGTTTTAATTGCTTGGAACTTCCTGTTTGATGACAAAGTTCAAAGAGAGGTAAAGAGCAATGCCTTAGAATATGTGACCAAAGTATTGGTATGTCTTCTTGTAAGCACTTTGGTTTGGCTAGTAAAAACACTGATGGTGAAGGTTTTGGCCTCTTCTTTCCATGTGAGTACATATTTTGATAGGATTCAAGATGCATTGTTTAACCAATATGTAATTGAGACACTGTCAGGTCCTCCATTGATAGAGATTCAAAAGAATGAGGAAGAAGAAGAGAGGCTTGCTGAAGAGGTTATAAAGTTACAGAATGCAGGGGCTACCATCCCTCCTGATTTAAAGGCAACTGCCTTTTCTACAGCTCAAAAGGGTGGGAGGGTGATAGGTAGTGGAGGGTTGCAAAAAAGTCCTCGTGGAAGAAGTGGCAAGTTATCTAGGACACTGTCGAAAAAGGGCGGCGATGAGGGTATAACAATTGATCACTTGCATAAGCTTAGTCCTAAGAATGTGTCTGCTTGGAATATGAAGAGATTGATGAACATTGTTAGACATGGGACCCTTTCAACTTTAGATGAACAGATTAAAGATACAGCTCATGAGGACGAATCAACCACAGAGATTAAGAGTGAATATGAGGCAAAAGTTGCTGCGAAGAAGATTTTTCTGAACGTGGCTAGAAATGGTTCTAAATATATCTACCTAGAGGACTTGATGCGTTTCATGGAAAAAGATGAGGCTTCAAAAACCATGGGTCTCTTTGAAGGAGCATGTGAGAGTAGAAAAATAAGCAAATCATCCTTGAAAAACTGGGTGGTTAATGCCTTTAGAGAACGAAGGGCTCTAGCTTTGACATTGAACGATACCAAAACAGCAGTGAACAAACTTCACCGCATGACTGTTTTTGAATCAATCATCTTCTTATTCGTGATGCATCCATTTGACGTCGGAGACCGATGTGAAATTGATGGTGTGCAGATGATTGTTGAAGAAATGAACATTTTGACTACTATTTTTCTAAGATACGACAACCAGAAGATCATATTTCCGAACAGCGTTCTCGCAACAAAGGCTATCCACAACTTCTATCGTAGTCCTGACATGGGAGATGGTATAGAATTCTGTCTTCACATATCTACTCCACCTGAGAAAATAGCTATCATGAGACAAAGAATAATAAGTTACATTGAGGGCAAGAAAGAGCATTGGTGTCCTGCGCCAATGATTGTCCTAAAGGATGTAGAAGAGTTAAATAGAATGAGAATAGCAATATGGCTTACTCATAGAATGAACCATCAAGACATGGGGGAGAGGTGGACAAGGAGAGCTCTTTTGGTCGAAGAACTTGTTAAAATTTTCCAAGAGCTCGATTTGCAATACCGTCTCCTACCACTTGATATCAATGTTCGCTCCTTGCCTCCTGTGAACTCTACTAATCTTCCTCAAAGGTAA 2640 41.78 MDFSLKSFKSHPSYKYVRKLSGADATQDHEHLPILSDHQHSIMAVSDSSDRKEVIVKVDEADASTLRATDLVNGSGTIWRESSYDFWNDSDNRRNYGEGGAKTTDDFEFRQHRKDVEDPPSKLIGQFLHKQKASGEMSLDMDMEMLELPQDKTPLSTVAESPMRRSSRELKVSFESISEISENDSMRRRHRDSPLDEEHRGQQPRQCDRRAHGSNGEDDGAAEVLRCSSNSFFQRDVSFQRKSSLLRAKTKSRLLDPPEHQDRRSGRVPKSGQVRSGLISKALDEEDDDPFLEEDLPDEYKKANLGVLTLLQWASLILIIAALVCTLTIRYWRRKKLWKLEVWKWEVMILVLICGRLVSGWGIRVIVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGLVLIAWNFLFDDKVQREVKSNALEYVTKVLVCLLVSTLVWLVKTLMVKVLASSFHVSTYFDRIQDALFNQYVIETLSGPPLIEIQKNEEEEERLAEEVIKLQNAGATIPPDLKATAFSTAQKGGRVIGSGGLQKSPRGRSGKLSRTLSKKGGDEGITIDHLHKLSPKNVSAWNMKRLMNIVRHGTLSTLDEQIKDTAHEDESTTEIKSEYEAKVAAKKIFLNVARNGSKYIYLEDLMRFMEKDEASKTMGLFEGACESRKISKSSLKNWVVNAFRERRALALTLNDTKTAVNKLHRMTVFESIIFLFVMHPFDVGDRCEIDGVQMIVEEMNILTTIFLRYDNQKIIFPNSVLATKAIHNFYRSPDMGDGIEFCLHISTPPEKIAIMRQRIISYIEGKKEHWCPAPMIVLKDVEELNRMRIAIWLTHRMNHQDMGERWTRRALLVEELVKIFQELDLQYRLLPLDINVRSLPPVNSTNLPQR* 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8687901 8692728 + CsaV3_6G012580.1 Csa06g01060 532687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01060 879 MobiDBLite consensus disorder prediction 250 274 - -
Csa06g01060 879 PIRSF Memb_At2g17000 695 879 IPR016688 -
Csa06g01060 879 PIRSF Memb_At2g17000 37 698 IPR016688 -
Csa06g01060 879 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 696 876 IPR016688 -
Csa06g01060 879 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 6 695 IPR016688 -
Csa06g01060 879 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 696 876 - -
Csa06g01060 879 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 6 695 - -
Csa06g01060 879 SUPERFAMILY Sm-like ribonucleoproteins 698 758 IPR010920 -
Csa06g01060 879 MobiDBLite consensus disorder prediction 181 219 - -
Csa06g01060 879 Gene3D - 709 758 IPR023408 -
Csa06g01060 879 MobiDBLite consensus disorder prediction 524 549 - -
Csa06g01060 879 Pfam Mechanosensitive ion channel 702 853 IPR006685 GO:0016020|GO:0055085
Csa06g01060 879 MobiDBLite consensus disorder prediction 252 269 - -
Csa06g01060 879 MobiDBLite consensus disorder prediction 150 221 - -
Csa06g01060 879 Coils Coil 482 505 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01060 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - csv:101210264 1680.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01060 Csa-Chr6:8687901 Csa07g00130 Csa-Chr7:1148400 0 dispersed
Csa06g01060 Csa-Chr6:8687901 Csa01g02964 Csa-Chr1:25997051 8.72E-163 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g00877 . 129 519 Mechanosensitive Ion Channel Family AT4G00290 66.0 5.1e-152 534.6
Csa02g02208 . 10 675 Mechanosensitive Ion Channel Family AT5G10490 58.1 2.3e-195 679.1
Csa03g00687 . 63 723 Mechanosensitive Ion Channel Family AT5G10490 56.4 1.8e-184 642.9
Csa02g02208 . 10 667 Mechanosensitive Ion Channel Family AT1G58200 58.7 2.2e-198 689.1
Csa03g00687 . 43 505 Mechanosensitive Ion Channel Family AT1G58200 64.6 1.8e-168 589.7
Csa06g01060 . 43 877 Mechanosensitive Ion Channel Family AT1G53470 52.2 1.2e-236 816.6
Csa06g01060 . 43 870 Mechanosensitive Ion Channel Family AT3G14810 50.3 1.1e-226 783.5
Csa07g00130 . 59 955 Mechanosensitive Ion Channel Family AT1G78610 55.9 2.9e-272 934.9
Csa06g01060 . 43 877 Mechanosensitive Ion Channel Family AT1G78610 56.3 6.3e-259 890.6
Csa04g02574 . 18 272 Mechanosensitive Ion Channel Family AT1G78610 50.6 8.4e-70 262.3
Csa07g00130 . 269 943 Mechanosensitive Ion Channel Family AT2G17000 58.3 6.7e-221 764.2
Csa06g01060 . 217 877 Mechanosensitive Ion Channel Family AT2G17000 57.1 1.7e-216 749.6
Csa04g02574 . 1 272 Mechanosensitive Ion Channel Family AT5G19520 56.6 2.6e-83 307.0
Csa01g02964 . 59 751 Mechanosensitive Ion Channel Family AT5G12080 52.1 4.2e-195 678.3
Csa04g02572 . 798 1452 Mechanosensitive Ion Channel Family AT5G12080 54.3 3.7e-191 665.2
Csa04g02574 . 1 272 Mechanosensitive Ion Channel Family AT5G12080 65.2 2.4e-97 353.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01060 Csa_Chr06 FPKM 39.448521 40.531815 74.829941 90.61937 26.81179 18.142321 18.060383 64.710701 66.372543 65.777206