Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01061 ATGCCTAAATTAGAAAAACTACAAACAAGACGGCCTGGTTCTTTATCTGTGGCTGAGACTCTTGCTAAATGGAAAGATTACAATGATCACCTTGATTCATGTACTGATGAGCCAAAACTTACTCGTAGAGTTCCAGCCAAGGGATCGAAGAAGGGCTGCATGAAAGGTAAGGGAGGGCCAGAGAATATGCGATGTAATTACAGAGGAGTTAGGCAAAGGACATGGGGGAAGTGGGTTGCAGAAATTCGAGCACCGAATAGAGGAAGTCGGCTCTGGTTGGGTACATTTCCAACTGCGATTGATGCTGCACTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGCACTTTAGCTCGCCTCAATTTTCCCAATGTCTCAATTCCAACCTTGCTAAAAGGAAAAGAATTATCAAGGAAGGATTCTCGTGATGAAATCAAAAGGCCTTCACTCTCTTTTTTAGGATCAACTTCACTTAGTCTGAGTTCTGAATCAACAATAACATCAGATCTGTCTGAGGATTGTGCAGTTGAAGATGTCTAG 540 42.96 MPKLEKLQTRRPGSLSVAETLAKWKDYNDHLDSCTDEPKLTRRVPAKGSKKGCMKGKGGPENMRCNYRGVRQRTWGKWVAEIRAPNRGSRLWLGTFPTAIDAALAYDEAARAMYGTLARLNFPNVSIPTLLKGKELSRKDSRDEIKRPSLSFLGSTSLSLSSESTITSDLSEDCAVEDV* 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8697980 8700459 + CsaV3_6G012590.1 Csa06g01061 532688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01061 179 CDD AP2 65 125 IPR001471 GO:0003700|GO:0006355
Csa06g01061 179 SUPERFAMILY DNA-binding domain 66 123 IPR016177 GO:0003677
Csa06g01061 179 SMART rav1_2 66 129 IPR001471 GO:0003700|GO:0006355
Csa06g01061 179 ProSiteProfiles AP2/ERF domain profile. 66 123 IPR001471 GO:0003700|GO:0006355
Csa06g01061 179 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 151 - -
Csa06g01061 179 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Csa06g01061 179 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Csa06g01061 179 PRINTS Ethylene responsive element binding protein signature 89 105 IPR001471 GO:0003700|GO:0006355
Csa06g01061 179 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 6 151 - -
Csa06g01061 179 Pfam AP2 domain 65 115 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01662 Csa-Chr4:15924998 Csa06g01061 Csa-Chr6:8697980 5.58E-37 dispersed
Csa04g01665 Csa-Chr4:15964227 Csa06g01061 Csa-Chr6:8697980 4.57E-37 dispersed
Csa06g01061 Csa-Chr6:8697980 Csa06g03172 Csa-Chr6:27003092 7.12E-24 dispersed
Csa06g01061 Csa-Chr6:8697980 Csa06g00201 Csa-Chr6:1371453 9.39E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31974 PF00847 AP2 4.60E-14 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01061 - - csv:101207656 321.242