Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01089 ATGGGTTGTCAATGTTCCAAGCCTTCTGTTGATGAAGATGGCAAAAACAGAGCCACTGAGAAATTTCCTTCACGAAAGGCTTCACGAGTTAATTTATTAAGAAAAGGAGATGATATGGGATTGAATTCTTTGAAAAGAGATGAAGATGTTCGAATAAATTCCTTACAGAGATCAGATAGTATTCGATCAAAGGTGAAAACAGATGGTGGTGACATGAAACTTGCTTATTTGGACAAGAGAGTCAACGGCTCTAACAGAGTACACGATGATCAAATTGAAAAAAAGAAGAGGGAGCGGTTGGAAGCTGCCATTTCTGCTAATTATCCTGGTAAAGGAAGCATTCCAAAGGCCATGGAAGCAGAGCAAGTTGCAGCTGGTTGGCCAAGCTGGCTCTCCACTGTGGCCGGTGAGGCCCTTGAGGGGTGGCTGCCACGGAAGGCCGAAACTTTCGAGAAACTTGATAAGATAGGGCAGGGCACGTATAGTAGCGTTTACAAGGCTCGTGATATCATTCACAATAAACTAGTCGCTCTAAAACGAGTTCGATTTGATAATCTTGATGTGGAGAGTGTGAAGTTTATGGCCCGGGAAATCCTTATCCTGCGCAGGCTTGATCATCCAAATGTTATAAAATTGGAAGGCTTGATTACATCACCCCGATCATGTAGCTTGTACCTCGTTTTTGAGTATATGGAACATGACCTTACTGGGCTCGCATCTCGACCTGGTGTCAAGTTCAGCGAACCACAGGTCAAATGCTATATGCAACAACTTCTAAGGGGACTTGACTATTGCCACAGTCATGGTGTCCTCCACCGTGATATAAAGGGTTCAAATCTCCTAATTGACGACAATGGGATCTTGAAGATTGCAGATTTTGGATTAGCAAGTCCTTTTGACCCTCATAATCAAGTTCCCTTAACAAGTCGTGTAGTGACTCTATGGTACCGACCACCAGAACTTCTACTTGGAGCTTCTCACTATGGGGTTGCAGTGGACCTGTGGAGTACGGGCTGCATACTAGCTGAGCTATATGCTGGGAAACCTATCTTACCTGGAAAAACTGAGGTCGAACAGTTGCATAAGATATTTAAACTTTGTGGTTCACCGCCGGAGAATTATTGGAAGAAATTGCAGTTACCTCATTCAACTGGATTCAAGACAGCTCAGCCATACCGACGTTGTGTCGGGGAAATGTTGAAGGATTTCCCATCTTCTGTGGTGGCTCTTGTGGATAAGTTGCTTTCTGTAGATCCTGCTCATCGGGGAACAGCAGCTGCTGCTCTAAAGAGTGAGTTCTTTACAACTAAACCACTTGCATGCGAGCCTACAAGTTTGCCCAAATATCCTCCCAGCAAAGAGATCGATGCAAAATTCCACGGCTGCAGAAGGCAGTCGAGAGTTGAGGGCAAAGACCCTAAAGATTATGGGGAAGGGAGGCGACCTAAAGAAGATCACCACAATCTTTCTCTGAATGCTAAGGATGAAATAAACATGATGCAGAAAAGGCAAGGTCATTCAAGTCTTAAGGGCGGGAGTGGTTTGCTGAATCCTCATGGGGATGAAACAGTTTCTGGTTTATTGAATGCTCCGCCGAAACAATCTGTCACAGAAATTTGCTCAGATACAGGCAGGATTTCACATTCAGGACCGCTAATTAGCAAACCAGATTGGATGAAATCTAGAAAGCAACTCGATGACCATTCGATGGCACTTGACGGATCCAATCTCTCAGTATTATCCCGTTTAGTAGCAACGAGGTCTAATATATCTGATAATCCCCATGATAGACCAGGTCCATCACGATCAGAAGTAGGCAGATTGCCCGACTTCGTTAGGGATTCAGAGTCCACGAGAAAGCAGGACCGGATATTTTATACACACCGAGTTGCAGATTCATATCGAGTAGAAAACGAAAAGGCTTGTGCTAAAGAACAGTCTCTGCTTGCTTATGGAACAGACATGAATAAGCTTTATACTTCTGGCCCAATCCTTGGTCCATCAAACAACTTGGATAGAATTCTAAAAGAACGAGACCGTCAGATTCAAGAATATGCTCGACAAGCACGACATGGTAAAGCTGGTAACAATCAGTTAAAGAGTTCAAGAGCAACAAATGGAAAACATCTGATGTTGAGCCATGGAATGTGA 2151 43.89 MGCQCSKPSVDEDGKNRATEKFPSRKASRVNLLRKGDDMGLNSLKRDEDVRINSLQRSDSIRSKVKTDGGDMKLAYLDKRVNGSNRVHDDQIEKKKRERLEAAISANYPGKGSIPKAMEAEQVAAGWPSWLSTVAGEALEGWLPRKAETFEKLDKIGQGTYSSVYKARDIIHNKLVALKRVRFDNLDVESVKFMAREILILRRLDHPNVIKLEGLITSPRSCSLYLVFEYMEHDLTGLASRPGVKFSEPQVKCYMQQLLRGLDYCHSHGVLHRDIKGSNLLIDDNGILKIADFGLASPFDPHNQVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILAELYAGKPILPGKTEVEQLHKIFKLCGSPPENYWKKLQLPHSTGFKTAQPYRRCVGEMLKDFPSSVVALVDKLLSVDPAHRGTAAAALKSEFFTTKPLACEPTSLPKYPPSKEIDAKFHGCRRQSRVEGKDPKDYGEGRRPKEDHHNLSLNAKDEINMMQKRQGHSSLKGGSGLLNPHGDETVSGLLNAPPKQSVTEICSDTGRISHSGPLISKPDWMKSRKQLDDHSMALDGSNLSVLSRLVATRSNISDNPHDRPGPSRSEVGRLPDFVRDSESTRKQDRIFYTHRVADSYRVENEKACAKEQSLLAYGTDMNKLYTSGPILGPSNNLDRILKERDRQIQEYARQARHGKAGNNQLKSSRATNGKHLMLSHGM* 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8991456 8995523 - CsaV3_6G012870.1 Csa06g01089 532716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01089 716 PANTHER CELL DIVISION PROTEIN KINASE 112 684 - -
Csa06g01089 716 MobiDBLite consensus disorder prediction 452 488 - -
Csa06g01089 716 MobiDBLite consensus disorder prediction 10 24 - -
Csa06g01089 716 MobiDBLite consensus disorder prediction 690 716 - -
Csa06g01089 716 MobiDBLite consensus disorder prediction 1 30 - -
Csa06g01089 716 CDD STKc_CDK9_like 150 434 - -
Csa06g01089 716 MobiDBLite consensus disorder prediction 597 619 - -
Csa06g01089 716 ProSitePatterns Protein kinases ATP-binding region signature. 156 179 IPR017441 GO:0005524
Csa06g01089 716 MobiDBLite consensus disorder prediction 694 708 - -
Csa06g01089 716 ProSiteProfiles Protein kinase domain profile. 150 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01089 716 Gene3D Transferase(Phosphotransferase) domain 1 233 472 - -
Csa06g01089 716 Pfam Protein kinase domain 150 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01089 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 270 282 IPR008271 GO:0004672|GO:0006468
Csa06g01089 716 SUPERFAMILY Protein kinase-like (PK-like) 145 439 IPR011009 -
Csa06g01089 716 MobiDBLite consensus disorder prediction 453 488 - -
Csa06g01089 716 MobiDBLite consensus disorder prediction 504 529 - -
Csa06g01089 716 MobiDBLite consensus disorder prediction 588 619 - -
Csa06g01089 716 SMART serkin_6 150 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01089 716 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 112 684 - -
Csa06g01089 716 Gene3D Phosphorylase Kinase; domain 1 137 232 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00346 Csa-Chr2:2385123 Csa06g01089 Csa-Chr6:8991456 0 dispersed
Csa03g01943 Csa-Chr3:15340938 Csa06g01089 Csa-Chr6:8991456 0 dispersed
Csa06g01089 Csa-Chr6:8991456 Csa06g01090 Csa-Chr6:8998306 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78342 PF00069 Pkinase 3.80E-68 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01089 - - csv:101207826 1442.56