Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g01089 | ATGGGTTGTCAATGTTCCAAGCCTTCTGTTGATGAAGATGGCAAAAACAGAGCCACTGAGAAATTTCCTTCACGAAAGGCTTCACGAGTTAATTTATTAAGAAAAGGAGATGATATGGGATTGAATTCTTTGAAAAGAGATGAAGATGTTCGAATAAATTCCTTACAGAGATCAGATAGTATTCGATCAAAGGTGAAAACAGATGGTGGTGACATGAAACTTGCTTATTTGGACAAGAGAGTCAACGGCTCTAACAGAGTACACGATGATCAAATTGAAAAAAAGAAGAGGGAGCGGTTGGAAGCTGCCATTTCTGCTAATTATCCTGGTAAAGGAAGCATTCCAAAGGCCATGGAAGCAGAGCAAGTTGCAGCTGGTTGGCCAAGCTGGCTCTCCACTGTGGCCGGTGAGGCCCTTGAGGGGTGGCTGCCACGGAAGGCCGAAACTTTCGAGAAACTTGATAAGATAGGGCAGGGCACGTATAGTAGCGTTTACAAGGCTCGTGATATCATTCACAATAAACTAGTCGCTCTAAAACGAGTTCGATTTGATAATCTTGATGTGGAGAGTGTGAAGTTTATGGCCCGGGAAATCCTTATCCTGCGCAGGCTTGATCATCCAAATGTTATAAAATTGGAAGGCTTGATTACATCACCCCGATCATGTAGCTTGTACCTCGTTTTTGAGTATATGGAACATGACCTTACTGGGCTCGCATCTCGACCTGGTGTCAAGTTCAGCGAACCACAGGTCAAATGCTATATGCAACAACTTCTAAGGGGACTTGACTATTGCCACAGTCATGGTGTCCTCCACCGTGATATAAAGGGTTCAAATCTCCTAATTGACGACAATGGGATCTTGAAGATTGCAGATTTTGGATTAGCAAGTCCTTTTGACCCTCATAATCAAGTTCCCTTAACAAGTCGTGTAGTGACTCTATGGTACCGACCACCAGAACTTCTACTTGGAGCTTCTCACTATGGGGTTGCAGTGGACCTGTGGAGTACGGGCTGCATACTAGCTGAGCTATATGCTGGGAAACCTATCTTACCTGGAAAAACTGAGGTCGAACAGTTGCATAAGATATTTAAACTTTGTGGTTCACCGCCGGAGAATTATTGGAAGAAATTGCAGTTACCTCATTCAACTGGATTCAAGACAGCTCAGCCATACCGACGTTGTGTCGGGGAAATGTTGAAGGATTTCCCATCTTCTGTGGTGGCTCTTGTGGATAAGTTGCTTTCTGTAGATCCTGCTCATCGGGGAACAGCAGCTGCTGCTCTAAAGAGTGAGTTCTTTACAACTAAACCACTTGCATGCGAGCCTACAAGTTTGCCCAAATATCCTCCCAGCAAAGAGATCGATGCAAAATTCCACGGCTGCAGAAGGCAGTCGAGAGTTGAGGGCAAAGACCCTAAAGATTATGGGGAAGGGAGGCGACCTAAAGAAGATCACCACAATCTTTCTCTGAATGCTAAGGATGAAATAAACATGATGCAGAAAAGGCAAGGTCATTCAAGTCTTAAGGGCGGGAGTGGTTTGCTGAATCCTCATGGGGATGAAACAGTTTCTGGTTTATTGAATGCTCCGCCGAAACAATCTGTCACAGAAATTTGCTCAGATACAGGCAGGATTTCACATTCAGGACCGCTAATTAGCAAACCAGATTGGATGAAATCTAGAAAGCAACTCGATGACCATTCGATGGCACTTGACGGATCCAATCTCTCAGTATTATCCCGTTTAGTAGCAACGAGGTCTAATATATCTGATAATCCCCATGATAGACCAGGTCCATCACGATCAGAAGTAGGCAGATTGCCCGACTTCGTTAGGGATTCAGAGTCCACGAGAAAGCAGGACCGGATATTTTATACACACCGAGTTGCAGATTCATATCGAGTAGAAAACGAAAAGGCTTGTGCTAAAGAACAGTCTCTGCTTGCTTATGGAACAGACATGAATAAGCTTTATACTTCTGGCCCAATCCTTGGTCCATCAAACAACTTGGATAGAATTCTAAAAGAACGAGACCGTCAGATTCAAGAATATGCTCGACAAGCACGACATGGTAAAGCTGGTAACAATCAGTTAAAGAGTTCAAGAGCAACAAATGGAAAACATCTGATGTTGAGCCATGGAATGTGA | 2151 | 43.89 | MGCQCSKPSVDEDGKNRATEKFPSRKASRVNLLRKGDDMGLNSLKRDEDVRINSLQRSDSIRSKVKTDGGDMKLAYLDKRVNGSNRVHDDQIEKKKRERLEAAISANYPGKGSIPKAMEAEQVAAGWPSWLSTVAGEALEGWLPRKAETFEKLDKIGQGTYSSVYKARDIIHNKLVALKRVRFDNLDVESVKFMAREILILRRLDHPNVIKLEGLITSPRSCSLYLVFEYMEHDLTGLASRPGVKFSEPQVKCYMQQLLRGLDYCHSHGVLHRDIKGSNLLIDDNGILKIADFGLASPFDPHNQVPLTSRVVTLWYRPPELLLGASHYGVAVDLWSTGCILAELYAGKPILPGKTEVEQLHKIFKLCGSPPENYWKKLQLPHSTGFKTAQPYRRCVGEMLKDFPSSVVALVDKLLSVDPAHRGTAAAALKSEFFTTKPLACEPTSLPKYPPSKEIDAKFHGCRRQSRVEGKDPKDYGEGRRPKEDHHNLSLNAKDEINMMQKRQGHSSLKGGSGLLNPHGDETVSGLLNAPPKQSVTEICSDTGRISHSGPLISKPDWMKSRKQLDDHSMALDGSNLSVLSRLVATRSNISDNPHDRPGPSRSEVGRLPDFVRDSESTRKQDRIFYTHRVADSYRVENEKACAKEQSLLAYGTDMNKLYTSGPILGPSNNLDRILKERDRQIQEYARQARHGKAGNNQLKSSRATNGKHLMLSHGM* | 717 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 8991456 | 8995523 | - | CsaV3_6G012870.1 | Csa06g01089 | 532716 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g01089 | 716 | PANTHER | CELL DIVISION PROTEIN KINASE | 112 | 684 | - | - | |
Csa06g01089 | 716 | MobiDBLite | consensus disorder prediction | 452 | 488 | - | - | |
Csa06g01089 | 716 | MobiDBLite | consensus disorder prediction | 10 | 24 | - | - | |
Csa06g01089 | 716 | MobiDBLite | consensus disorder prediction | 690 | 716 | - | - | |
Csa06g01089 | 716 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Csa06g01089 | 716 | CDD | STKc_CDK9_like | 150 | 434 | - | - | |
Csa06g01089 | 716 | MobiDBLite | consensus disorder prediction | 597 | 619 | - | - | |
Csa06g01089 | 716 | ProSitePatterns | Protein kinases ATP-binding region signature. | 156 | 179 | IPR017441 | GO:0005524 | |
Csa06g01089 | 716 | MobiDBLite | consensus disorder prediction | 694 | 708 | - | - | |
Csa06g01089 | 716 | ProSiteProfiles | Protein kinase domain profile. | 150 | 434 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g01089 | 716 | Gene3D | Transferase(Phosphotransferase) domain 1 | 233 | 472 | - | - | |
Csa06g01089 | 716 | Pfam | Protein kinase domain | 150 | 434 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g01089 | 716 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 270 | 282 | IPR008271 | GO:0004672|GO:0006468 | |
Csa06g01089 | 716 | SUPERFAMILY | Protein kinase-like (PK-like) | 145 | 439 | IPR011009 | - | |
Csa06g01089 | 716 | MobiDBLite | consensus disorder prediction | 453 | 488 | - | - | |
Csa06g01089 | 716 | MobiDBLite | consensus disorder prediction | 504 | 529 | - | - | |
Csa06g01089 | 716 | MobiDBLite | consensus disorder prediction | 588 | 619 | - | - | |
Csa06g01089 | 716 | SMART | serkin_6 | 150 | 434 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa06g01089 | 716 | PANTHER | BINDING PROTEIN, PUTATIVE-RELATED | 112 | 684 | - | - | |
Csa06g01089 | 716 | Gene3D | Phosphorylase Kinase; domain 1 | 137 | 232 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g00346 | Csa-Chr2:2385123 | Csa06g01089 | Csa-Chr6:8991456 | 0 | dispersed | |
Csa03g01943 | Csa-Chr3:15340938 | Csa06g01089 | Csa-Chr6:8991456 | 0 | dispersed | |
Csa06g01089 | Csa-Chr6:8991456 | Csa06g01090 | Csa-Chr6:8998306 | 0 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78342 | PF00069 | Pkinase | 3.80E-68 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g01089 | - | - | csv:101207826 | 1442.56 |