Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01090 ATGGGTTGCATCTGTTCTAAGGTTTTAGCTGACGAGTGTAGTGACAATGAGCATGATAGCTCCAAAAGACCCCATTCCTCTATGAAGCACCTCTCTGAATTGAAAATACCAAGAGCTGGTTCTCCCAATTCTTCTCAGGTTTGGGAGAAGGATAGACTGGATTGTAGTGATGTTACGGTTATGCTGTTCGATACGAAGCCAAACGGTTCTCTACGTTCATATAACAAGCCTCCTAATGAGAAGAAGAAGACAGATGTCCTTGATGTCACCTTTATCAACCATCCACGTATGAGAAAGATTCCAAATGCCATCGAGGCCGAGCAAGTCGCTGCCGGGTGGCCGAGTTGGCTGGCTGTGGTGGCTGGTGAAGCTATCAAAGGCTGGTTGCCAAAACGTGCAAGCAACTTCGTCAAGTTAGATAAAATTGGCCAAGGAACTTATAGCAGTGTGTATAAAGCTCGTGATATCATTCAAGATAAAGTTGTGGCTTTGAAAAGGATCAGATTTGACAATCAAGATGCTGAGAGTATCAAGTTTATGGCAAGGGAAATCCTTGTTTTGAGAAGGCTTGATCATCCAAATATAGTTAAGTTGGAAGGTTTGATCACATCACAAACATCTTGTACCATGTACCTTGTTTTTGAATATATGGAGCATGATCTTACCGGACTCACATCACGGCCTGGTGCATCGTTCACCGAACCACAGATGAAGTGTTACATGAAACAACTTTTGAGTGGACTTGATCATTGTCACAGTAACGGGGTTCTACATAGAGATATAAAGGGCTCTAATCTTCTTATCGACAATAATGGTATTTTGAAGATAGCAGATTTTGGGTTGGCTGTTTTCTTTGACTCACAATCAGCAGTTCCAATGACAAGCCGTGTAATAACACTCTGGTATCGACCACCAGAACTTTTACTTGGAGCGTCTAAATATGGAGTCGAAGTTGATTTATGGAGTGCTGGTTGCATTCTAGGAGAGTTATATAGTGGCAAACCTATCTTGCCAGGAAAAACAGAGGTTGAACAACTACATAAAATATATAAGCTATGTGGTTCTCCTTCCAAGGACTATTGGAAAAAATTGCATTTGAAGCATTCAACAAGCATGAAACCTCCACAGTCATACGAAAGATGTCTTCGAGAAAGATATAACGATATTCCTCATAGCGCTGTCGATCTTATGGACACTTTGTTATCTATAGATCCTGCAGGGCGAGGAACTGCAGCTTCCGCTCTCGACAGTGAGTTCTTTACCACAAGGCCCTTACCAAGTGATCCTTCAAGTTTGCCAAAATACCCTCCAAGCAAAGAGATCAATACGAAACTGCGTGAAGAAGAAGCAAGAAGGCAACAAGGAGTAGGCGGTGGGAGAAGCCAAATAGTTTACCAAGAAGCAAAAGGAATGAAGCAATCCAGAGTAGTTCCTGCTGCAAAGACTAGTGCTGATCAATTGGTTATTTCATTATTGAGAAAACGAAGTCGTTGGAGTGCGAAATACCGGAATGAAACGTGTTCTTACGGTTTGGTGTCCAAAAGAAACTCAAACTCAGGACCTATAACGACTCATGGACCAAGATATACAAACTCAAAAAAGGAACCGAAAAATGCTTCTATTTCGAGTGAGTGTTTAACATCATCTGGTTCAATGGAATTTGTTTCTTATAAATACTTCAGCGAAAGATCAAATGGAGTTTCAAGGCCAGAATCAATGAGCGAAGACAAAAATCTTCCTCCTCTATCCAGTTCTGGTGGAGTGTCATCCATCAAAAAGATGAACAAAGAAGACCAGGTTGATATGAAGAAAGTTGCAAATTCTTGTCACTTGGAAGAATCAAAGGCCTCAGCTCTAATAGTTGGCTAA 1869 41.31 MGCICSKVLADECSDNEHDSSKRPHSSMKHLSELKIPRAGSPNSSQVWEKDRLDCSDVTVMLFDTKPNGSLRSYNKPPNEKKKTDVLDVTFINHPRMRKIPNAIEAEQVAAGWPSWLAVVAGEAIKGWLPKRASNFVKLDKIGQGTYSSVYKARDIIQDKVVALKRIRFDNQDAESIKFMAREILVLRRLDHPNIVKLEGLITSQTSCTMYLVFEYMEHDLTGLTSRPGASFTEPQMKCYMKQLLSGLDHCHSNGVLHRDIKGSNLLIDNNGILKIADFGLAVFFDSQSAVPMTSRVITLWYRPPELLLGASKYGVEVDLWSAGCILGELYSGKPILPGKTEVEQLHKIYKLCGSPSKDYWKKLHLKHSTSMKPPQSYERCLRERYNDIPHSAVDLMDTLLSIDPAGRGTAASALDSEFFTTRPLPSDPSSLPKYPPSKEINTKLREEEARRQQGVGGGRSQIVYQEAKGMKQSRVVPAAKTSADQLVISLLRKRSRWSAKYRNETCSYGLVSKRNSNSGPITTHGPRYTNSKKEPKNASISSECLTSSGSMEFVSYKYFSERSNGVSRPESMSEDKNLPPLSSSGGVSSIKKMNKEDQVDMKKVANSCHLEESKASALIVG* 623
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8998306 9002494 - CsaV3_6G012880.1 Csa06g01090 532717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01090 622 CDD STKc_CDK9_like 136 420 - -
Csa06g01090 622 MobiDBLite consensus disorder prediction 14 32 - -
Csa06g01090 622 MobiDBLite consensus disorder prediction 513 544 - -
Csa06g01090 622 MobiDBLite consensus disorder prediction 565 591 - -
Csa06g01090 622 PANTHER CELL DIVISION PROTEIN KINASE 73 609 - -
Csa06g01090 622 ProSiteProfiles Protein kinase domain profile. 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01090 622 MobiDBLite consensus disorder prediction 420 439 - -
Csa06g01090 622 MobiDBLite consensus disorder prediction 14 46 - -
Csa06g01090 622 Gene3D Transferase(Phosphotransferase) domain 1 219 458 - -
Csa06g01090 622 SMART serkin_6 136 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01090 622 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 73 609 - -
Csa06g01090 622 Pfam Protein kinase domain 137 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01090 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Csa06g01090 622 SUPERFAMILY Protein kinase-like (PK-like) 131 427 IPR011009 -
Csa06g01090 622 ProSitePatterns Protein kinases ATP-binding region signature. 142 165 IPR017441 GO:0005524
Csa06g01090 622 Gene3D Phosphorylase Kinase; domain 1 123 218 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa06g01090 Csa07g00449 CCT
Csa06g01090 Csa07g00449 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g01090 Csa-Chr6:8998306 Csa01g00572 Csa-Chr1:3682563 7.47E-172 dispersed
Csa06g01089 Csa-Chr6:8991456 Csa06g01090 Csa-Chr6:8998306 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78343 PF00069 Pkinase 1.00E-67 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01090 - - csv:101207580 1228.0