Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01104 ATGCAGCTCTTCCTTCACCGCTCTACTTTCCGCCTCATTACAGCTTTCTTCTCTGCTGCAGCTTTGCTCCATTGGTTCGCTGCAGCGGCTCACCTCCAACACCCTGTGCCGGATCTACATTGGCTTCCAGCCACCGCCACTTGGTACGGAAGCCCCGAGGGAGACGGTAGCGACGGTGGAGCATGTGGGTATGGTAATTTAGTGGATGTGAAGCCTTTAAAGGCTAGAGTTGGGGCTGTGAGTCCTGTTTTGTTCAGAAATGGTGAAGGTTGTGGAGCTTGTTACAAAGTGAAGTGTTTGGACCACAACATTTGCTCTAGACGAGCAGTGACTATAATCGTCACCGACGAGTGCCCCGGTGGGTATTGTTCCAATGGCAATACTCACTTCGATCTCAGCGGCGCCGCCTTTGGTCGTATGGCCATTGCCGGAGAAGGTGGGCAGCTCAGAAACCGAGGAGAAATCCCAGTAATTTACCGACGAACTCCGTGTAAGTACCCAGGCAAGAACATTGCCTTCCATGTCAATGAAGGCTCGACAGATTACTGGCTCTCACTCTTGGTTGAATTCGAGGATGGGGATGGAGACATTGGTGCAATGCAAATAAAAGAAACAAATTCAGGGGAGTGGCTGGATATGAACCATCTATGGGGAGCAAATTGGTGCATAATTGGTGGGCCATTAAAGGGCCCATTCTCAGTGAGATTAACAACATTATCTACCGGAAGAACTCTCTCAGCAAGAGATATAATCCCAAGGAATTGGTCTCCAAAAGCCACATACACTTCCCGCCTTAAATTCTTCACTTAA 810 49.26 MQLFLHRSTFRLITAFFSAAALLHWFAAAAHLQHPVPDLHWLPATATWYGSPEGDGSDGGACGYGNLVDVKPLKARVGAVSPVLFRNGEGCGACYKVKCLDHNICSRRAVTIIVTDECPGGYCSNGNTHFDLSGAAFGRMAIAGEGGQLRNRGEIPVIYRRTPCKYPGKNIAFHVNEGSTDYWLSLLVEFEDGDGDIGAMQIKETNSGEWLDMNHLWGANWCIIGGPLKGPFSVRLTTLSTGRTLSARDIIPRNWSPKATYTSRLKFFT* 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9119830 9125441 + CsaV3_6G013020.1 Csa06g01104 532731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01104 269 Pfam Expansin C-terminal domain 171 252 IPR007117 -
Csa06g01104 269 SUPERFAMILY Barwin-like endoglucanases 39 168 IPR036908 -
Csa06g01104 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 182 263 IPR007117 -
Csa06g01104 269 SMART dpbb_1 77 159 IPR007112 -
Csa06g01104 269 SUPERFAMILY PHL pollen allergen 169 263 IPR036749 -
Csa06g01104 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 59 169 IPR007112 -
Csa06g01104 269 PRINTS Major pollen allergen Lol pI signature 79 90 IPR005795 GO:0005576|GO:0019953
Csa06g01104 269 PRINTS Major pollen allergen Lol pI signature 119 134 IPR005795 GO:0005576|GO:0019953
Csa06g01104 269 PRINTS Major pollen allergen Lol pI signature 141 156 IPR005795 GO:0005576|GO:0019953
Csa06g01104 269 PRINTS Major pollen allergen Lol pI signature 173 188 IPR005795 GO:0005576|GO:0019953
Csa06g01104 269 PRINTS Major pollen allergen Lol pI signature 189 204 IPR005795 GO:0005576|GO:0019953
Csa06g01104 269 PRINTS Major pollen allergen Lol pI signature 239 256 IPR005795 GO:0005576|GO:0019953
Csa06g01104 269 Pfam Lytic transglycolase 79 158 IPR009009 -
Csa06g01104 269 Gene3D - 29 164 IPR036908 -
Csa06g01104 269 PRINTS Expansin/Lol pI family signature 40 55 IPR007118 GO:0005576
Csa06g01104 269 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Csa06g01104 269 PRINTS Expansin/Lol pI family signature 81 99 IPR007118 GO:0005576
Csa06g01104 269 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Csa06g01104 269 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Csa06g01104 269 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Csa06g01104 269 PANTHER EXPANSIN-LIKE PROTEIN B1 13 268 - -
Csa06g01104 269 Gene3D - 165 264 IPR036749 -
Csa06g01104 269 PANTHER EXPANSIN-B3 13 268 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa06g01104 Csa07g00436 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00739 Csa-Chr3:6584510 Csa06g01104 Csa-Chr6:9119830 3.88E-75 dispersed
Csa06g01104 Csa-Chr6:9119830 Csa03g00625 Csa-Chr3:5430736 2.92E-36 dispersed
Csa03g04649 Csa-Chr3:40386206 Csa06g01104 Csa-Chr6:9119830 2.25E-29 transposed
Csa06g01104 Csa-Chr6:9119830 Csa07g00436 Csa-Chr7:3137269 1.73E-147 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01104 K20628 - csv:101202998 536.184