Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01114 ATGCAAGATCCACCACCGCCATCAAACCCTATCCCCACTCCTAATTCCAATCAAATTCCTCCACTCAATCTTACACAACCGCCCCCCAAGACTCACAAACCCCCGCCGCCGCCGCTGGTCTCCAATGCCACGGCCGCGCCTTCTTCATCATCCATTTTTCCCAATGTCAATGCTGGAAATGCCTCATTCATTCCTAGACTTGGTTCTCATCATCGGAGAGCTCATTCCGAAGTTAGTTTCCGGTTGCCGGAGGATATGATGGATATTTCCGGGTCGGATCCGTTTAATGGTGGTTCGTCCACGGCGAGTTTGGAGGAGATCGGATCGGAAGATGATCTGTTTTCGACCTACATTGATGTGAAGAAGCTTGGAGGTAATGGGGGAGGCAATTTTGTGGATCATTATGGTAATGGTGGATGTGAAGGTGGTGCTGCTGGTAGTGAAGGGGAGAAGACTTCGAAACCAAGGCATCGGCATAGTGTTTCGGTGGATGGAACGACGTCGTCGTCCAGTATGTTTGGGGAAATTATGGAAGCCAAGAAAGCTATGCCTCCTGATAAGTTGGCTGAGCTTTGGTCCAGTGATCCCAAACGCGCTAAAAGGATACTGGCCAATCGACAGTCAGCTGCACGCTCGAAAGAGAGAAAGGCACGATATATACAAGAGTTGGAACGCAAAGTGCAAACCCTTCAAACAGAAGCAACTACTCTATCAGCTCAGTTGACTTTGTTCCAGCGAGACACAACGGGACTCAGTACTGAAAATACAGAGCTTAAGCTTCGGTTACAGGCTATGGAGCAACAAGCCCAATTACGTGATGCTTTGAATGACGCATTAAAGAAGGAAGTTGAGAGGCTTAAAATTGCTACCGGGGAAATGATGAGCCCGTCCGAGTCGTTTAACTTGGGAATGCATCATATGGCATACGCCCCATCATCTTTCATTCAACTTTCGCAGCAACAACCAGGATCTACTGGCCTTCAAAATATGCAAATCCCTCCATTTGGTCATTCTCCATCCAATATGTCTACCCACCCGTTGCTTCCATCAGATTCTCATTCTCTCTCTGAGGTTCTACAGACCGACTCTCTCGGTCGATTACAGGGTCTCGACATCAGTAGTAAAGGATCGTCGCTTGTGAAATCCGAGGGCCCTTCACTCTCTGCTAGTGAAAGCAGTACAACCTTTTGA 1191 48.19 MQDPPPPSNPIPTPNSNQIPPLNLTQPPPKTHKPPPPPLVSNATAAPSSSSIFPNVNAGNASFIPRLGSHHRRAHSEVSFRLPEDMMDISGSDPFNGGSSTASLEEIGSEDDLFSTYIDVKKLGGNGGGNFVDHYGNGGCEGGAAGSEGEKTSKPRHRHSVSVDGTTSSSSMFGEIMEAKKAMPPDKLAELWSSDPKRAKRILANRQSAARSKERKARYIQELERKVQTLQTEATTLSAQLTLFQRDTTGLSTENTELKLRLQAMEQQAQLRDALNDALKKEVERLKIATGEMMSPSESFNLGMHHMAYAPSSFIQLSQQQPGSTGLQNMQIPPFGHSPSNMSTHPLLPSDSHSLSEVLQTDSLGRLQGLDISSKGSSLVKSEGPSLSASESSTTF* 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9232616 9235876 - CsaV3_6G013120.1 Csa06g01114 532741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01114 396 MobiDBLite consensus disorder prediction 370 396 - -
Csa06g01114 396 MobiDBLite consensus disorder prediction 142 169 - -
Csa06g01114 396 Coils Coil 213 240 - -
Csa06g01114 396 MobiDBLite consensus disorder prediction 1 42 - -
Csa06g01114 396 Pfam bZIP transcription factor 197 245 IPR004827 GO:0003700|GO:0006355
Csa06g01114 396 Gene3D - 197 246 - -
Csa06g01114 396 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 1 393 - -
Csa06g01114 396 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 195 258 IPR004827 GO:0003700|GO:0006355
Csa06g01114 396 SUPERFAMILY Leucine zipper domain 197 248 IPR046347 GO:0003700|GO:0006355
Csa06g01114 396 SMART brlzneu 193 257 IPR004827 GO:0003700|GO:0006355
Csa06g01114 396 MobiDBLite consensus disorder prediction 43 58 - -
Csa06g01114 396 MobiDBLite consensus disorder prediction 318 355 - -
Csa06g01114 396 MobiDBLite consensus disorder prediction 1 71 - -
Csa06g01114 396 CDD bZIP_plant_RF2 198 247 IPR044759 GO:0003700|GO:0006355
Csa06g01114 396 PANTHER ATBZIP TRANSCRIPTION FACTOR 1 393 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g03284 Csa06g01114 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00893 Csa-Chr5:6934222 Csa06g01114 Csa-Chr6:9232616 1.95E-121 dispersed
Csa06g01114 Csa-Chr6:9232616 Csa07g01423 Csa-Chr7:14447945 1.49E-57 dispersed
Csa06g01114 Csa-Chr6:9232616 Csa06g00532 Csa-Chr6:4513114 3.74E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
31981 PF00170 bZIP_1 1.60E-08 CL0018 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01114 - - csv:101205663 697.967