Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa06g01117 | ATGGATCTCCTCCTCTTGGAGAAGACTCTCCTCGGCCTCTTCCTCTCCGTCGTCCTCGCTATCGCCATTTCCAAGCTTCGCGGCAAGCGTTTCAAGCTTCCGCCGGGTCCTTTACCCGTCCCCATCTTCGGCAACTGGCTCCAAGTCGGTGATGACTTGAACCACCGTAACCTCACAGATCTCGCAAAGAAATTTGGCGATATCTTCTTGCTTCGGATGGGACAGAGGAACCTCGTCGTCGTTTCCTCCCCGGAATTAGCCAAGGAAGTGCTCCACACTCAGGGAGTTGAGTTCGGATCGCGAACCAGAAACGTCGTCTTCGATATCTTCACCGGTAAAGGTCAGGATATGGTTTTCACTGTCTATGGTGAACACTGGAGGAAAATGAGGCGGATTATGACTGTTCCGTTTTTCACTAACAAAGTAGTACAGCAATACCGTCAAGGATGGGAGTTCGAAGCTCAAAGTGTAGTGGATGATGTGAAGAAGAATCCAGAATCTGCGACTACTGGAATCGTTCTCCGACGGCGGTTGCAGCTTATGATGTACAATAACATGTACAGAATTATGTTCGATAGAAGATTCGAGAGTGAAGACGATCCTCTGTTTCACAAACTCAGGGCTCTGAATGGAGAGAGAAGCCGATTAGCGCAGAGCTTCGAATACAACTACGGCGATTTCATTCCGATCTTGAGGCCGTTCTTGAGAGGATATCTCAAAATCTGCAAGGAAGTTAAGGAAACGAGGCTGAAACTCTTCAAGGATTATTTCGTCGAGGAGAGGAAGAAACTTGCGAACACGAAGAGCACGACGAACGAGGGGTTGAAATGTGCGATCGATCATATATTGGATGCGCAACAGAAGGGAGAAATCAACGAAGATAATGTGCTTTACATTGTTGAGAATATTAATGTGGCAGCAATTGAAACAACATTATGGTCGATTGAATGGGGAATCGCGGAGCTAGTGAACCACCCAGAAATCCAAAGAAAGCTAAGAAATGAACTCGACACCGTACTCGGACCCGGTGTTCCAATCACTGAGCCAGACACACAAAAGCTCCCATACCTCCAAGCCGTGGTCAAGGAGACTCTCCGCCTTCGTATGACCATCCCATTACTCGTCCCTCACATGAACCTCCACGACGCCAAGCTTGCGGGCTATGACATTCCAGCGGAGAGCAAGATCCTAGTGAATGCTTGGTGGCTAGCCAACAACCCAGCCAACTGGAAGAACCCAGAAGAGTTCCGGCCCGAGAGGTTCTTGGAAGAGGAATCAAAGGTTGAAGCCAATGGAAATGATTTTAAATACTTGCCTTTTGGTGCTGGGAGAAGGAGCTGCCCAGGAATCATCTTGGCTTTGCCAATTCTTGGTATTACAATTGGGCGTTTGGTTCAAAACTTTGAGCTGCTTCCTCCTCCTGGACAGTCTAAGCTGGATACTTCAGAGAAAGGTGGGCAATTTAGCTTGCATATTTTGAAACACTCCACCATTGTTGTTAAGCCAAGAGTGTTCTAA | 1518 | 47.76 | MDLLLLEKTLLGLFLSVVLAIAISKLRGKRFKLPPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRQGWEFEAQSVVDDVKKNPESATTGIVLRRRLQLMMYNNMYRIMFDRRFESEDDPLFHKLRALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKETRLKLFKDYFVEERKKLANTKSTTNEGLKCAIDHILDAQQKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQRKLRNELDTVLGPGVPITEPDTQKLPYLQAVVKETLRLRMTIPLLVPHMNLHDAKLAGYDIPAESKILVNAWWLANNPANWKNPEEFRPERFLEEESKVEANGNDFKYLPFGAGRRSCPGIILALPILGITIGRLVQNFELLPPPGQSKLDTSEKGGQFSLHILKHSTIVVKPRVF* | 506 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 9273652 | 9277439 | - | CsaV3_6G013150.1 | Csa06g01117 | 532744 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa06g01117 | 505 | SUPERFAMILY | Cytochrome P450 | 34 | 503 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g01117 | 505 | PANTHER | TRANS-CINNAMATE 4-MONOOXYGENASE | 1 | 505 | - | - | |
Csa06g01117 | 505 | Gene3D | Cytochrome P450 | 27 | 504 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g01117 | 505 | PRINTS | P450 superfamily signature | 306 | 323 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g01117 | 505 | PRINTS | P450 superfamily signature | 359 | 370 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g01117 | 505 | PRINTS | P450 superfamily signature | 438 | 447 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g01117 | 505 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 440 | 449 | IPR017972 | GO:0005506|GO:0016705 | |
Csa06g01117 | 505 | PRINTS | E-class P450 group I signature | 62 | 81 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g01117 | 505 | PRINTS | E-class P450 group I signature | 86 | 107 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g01117 | 505 | PRINTS | E-class P450 group I signature | 181 | 199 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g01117 | 505 | PRINTS | E-class P450 group I signature | 295 | 312 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g01117 | 505 | PRINTS | E-class P450 group I signature | 315 | 341 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g01117 | 505 | PRINTS | E-class P450 group I signature | 358 | 376 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g01117 | 505 | PRINTS | E-class P450 group I signature | 399 | 423 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g01117 | 505 | PRINTS | E-class P450 group I signature | 437 | 447 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g01117 | 505 | PRINTS | E-class P450 group I signature | 447 | 470 | IPR002401 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g01117 | 505 | Pfam | Cytochrome P450 | 34 | 495 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Csa06g01117 | 505 | PANTHER | TRANS-CINNAMATE 4-MONOOXYGENASE | 1 | 505 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01762 | Csa-Chr1:14380936 | Csa06g01117 | Csa-Chr6:9273652 | 0 | dispersed | |
Csa02g00690 | Csa-Chr2:5569383 | Csa06g01117 | Csa-Chr6:9273652 | 0 | dispersed | |
Csa02g00691 | Csa-Chr2:5572966 | Csa06g01117 | Csa-Chr6:9273652 | 0 | dispersed | |
Csa06g01117 | Csa-Chr6:9273652 | Csa01g00898 | Csa-Chr1:5587227 | 7.97E-76 | dispersed | |
Csa07g01864 | Csa-Chr7:18647924 | Csa06g01117 | Csa-Chr6:9273652 | 4.53E-30 | dispersed | |
Csa06g01117 | Csa-Chr6:9273652 | Csa01g00905 | Csa-Chr1:5635608 | 1.47E-75 | transposed | |
Csa06g01117 | Csa-Chr6:9273652 | Csa01g00112 | Csa-Chr1:637804 | 1.76E-75 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa06g01117 | K00487 | - | csv:101221846 | 989.949 |