Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01117 ATGGATCTCCTCCTCTTGGAGAAGACTCTCCTCGGCCTCTTCCTCTCCGTCGTCCTCGCTATCGCCATTTCCAAGCTTCGCGGCAAGCGTTTCAAGCTTCCGCCGGGTCCTTTACCCGTCCCCATCTTCGGCAACTGGCTCCAAGTCGGTGATGACTTGAACCACCGTAACCTCACAGATCTCGCAAAGAAATTTGGCGATATCTTCTTGCTTCGGATGGGACAGAGGAACCTCGTCGTCGTTTCCTCCCCGGAATTAGCCAAGGAAGTGCTCCACACTCAGGGAGTTGAGTTCGGATCGCGAACCAGAAACGTCGTCTTCGATATCTTCACCGGTAAAGGTCAGGATATGGTTTTCACTGTCTATGGTGAACACTGGAGGAAAATGAGGCGGATTATGACTGTTCCGTTTTTCACTAACAAAGTAGTACAGCAATACCGTCAAGGATGGGAGTTCGAAGCTCAAAGTGTAGTGGATGATGTGAAGAAGAATCCAGAATCTGCGACTACTGGAATCGTTCTCCGACGGCGGTTGCAGCTTATGATGTACAATAACATGTACAGAATTATGTTCGATAGAAGATTCGAGAGTGAAGACGATCCTCTGTTTCACAAACTCAGGGCTCTGAATGGAGAGAGAAGCCGATTAGCGCAGAGCTTCGAATACAACTACGGCGATTTCATTCCGATCTTGAGGCCGTTCTTGAGAGGATATCTCAAAATCTGCAAGGAAGTTAAGGAAACGAGGCTGAAACTCTTCAAGGATTATTTCGTCGAGGAGAGGAAGAAACTTGCGAACACGAAGAGCACGACGAACGAGGGGTTGAAATGTGCGATCGATCATATATTGGATGCGCAACAGAAGGGAGAAATCAACGAAGATAATGTGCTTTACATTGTTGAGAATATTAATGTGGCAGCAATTGAAACAACATTATGGTCGATTGAATGGGGAATCGCGGAGCTAGTGAACCACCCAGAAATCCAAAGAAAGCTAAGAAATGAACTCGACACCGTACTCGGACCCGGTGTTCCAATCACTGAGCCAGACACACAAAAGCTCCCATACCTCCAAGCCGTGGTCAAGGAGACTCTCCGCCTTCGTATGACCATCCCATTACTCGTCCCTCACATGAACCTCCACGACGCCAAGCTTGCGGGCTATGACATTCCAGCGGAGAGCAAGATCCTAGTGAATGCTTGGTGGCTAGCCAACAACCCAGCCAACTGGAAGAACCCAGAAGAGTTCCGGCCCGAGAGGTTCTTGGAAGAGGAATCAAAGGTTGAAGCCAATGGAAATGATTTTAAATACTTGCCTTTTGGTGCTGGGAGAAGGAGCTGCCCAGGAATCATCTTGGCTTTGCCAATTCTTGGTATTACAATTGGGCGTTTGGTTCAAAACTTTGAGCTGCTTCCTCCTCCTGGACAGTCTAAGCTGGATACTTCAGAGAAAGGTGGGCAATTTAGCTTGCATATTTTGAAACACTCCACCATTGTTGTTAAGCCAAGAGTGTTCTAA 1518 47.76 MDLLLLEKTLLGLFLSVVLAIAISKLRGKRFKLPPGPLPVPIFGNWLQVGDDLNHRNLTDLAKKFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRQGWEFEAQSVVDDVKKNPESATTGIVLRRRLQLMMYNNMYRIMFDRRFESEDDPLFHKLRALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKICKEVKETRLKLFKDYFVEERKKLANTKSTTNEGLKCAIDHILDAQQKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQRKLRNELDTVLGPGVPITEPDTQKLPYLQAVVKETLRLRMTIPLLVPHMNLHDAKLAGYDIPAESKILVNAWWLANNPANWKNPEEFRPERFLEEESKVEANGNDFKYLPFGAGRRSCPGIILALPILGITIGRLVQNFELLPPPGQSKLDTSEKGGQFSLHILKHSTIVVKPRVF* 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9273652 9277439 - CsaV3_6G013150.1 Csa06g01117 532744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01117 505 SUPERFAMILY Cytochrome P450 34 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g01117 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 505 - -
Csa06g01117 505 Gene3D Cytochrome P450 27 504 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g01117 505 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g01117 505 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g01117 505 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g01117 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Csa06g01117 505 PRINTS E-class P450 group I signature 62 81 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g01117 505 PRINTS E-class P450 group I signature 86 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g01117 505 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g01117 505 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g01117 505 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g01117 505 PRINTS E-class P450 group I signature 358 376 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g01117 505 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g01117 505 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g01117 505 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g01117 505 Pfam Cytochrome P450 34 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa06g01117 505 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 1 505 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01762 Csa-Chr1:14380936 Csa06g01117 Csa-Chr6:9273652 0 dispersed
Csa02g00690 Csa-Chr2:5569383 Csa06g01117 Csa-Chr6:9273652 0 dispersed
Csa02g00691 Csa-Chr2:5572966 Csa06g01117 Csa-Chr6:9273652 0 dispersed
Csa06g01117 Csa-Chr6:9273652 Csa01g00898 Csa-Chr1:5587227 7.97E-76 dispersed
Csa07g01864 Csa-Chr7:18647924 Csa06g01117 Csa-Chr6:9273652 4.53E-30 dispersed
Csa06g01117 Csa-Chr6:9273652 Csa01g00905 Csa-Chr1:5635608 1.47E-75 transposed
Csa06g01117 Csa-Chr6:9273652 Csa01g00112 Csa-Chr1:637804 1.76E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01117 K00487 - csv:101221846 989.949