Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01121 ATGAAGTTCTGTTCAGCATCAGTGCTTCCTCTGTTTTTTGTTATAATTAATCTACTTCACCTTGCAATTGCTGACCTGGAATCAGACAAGCAAGCTCTTCTTGACTTTGCATCTTCTGTTCCACATCGTCGGAGCCTCAACTGGAATGATACTACACCAATATGCACATCTTGGGTTGGCGTTACTTGCAGTGCAGATGGAACTCATGTGCTTACCCTTCGATTACCTGGCATTGGACTTGTGGGTTCAATTCCTTCTGACACCCTAGGGAAACTCGATGGCCTCAAGATTCTCAGTCTACGTTCCAACCTCCTTAGTGGAATAATTCCATCCGATATTACCTCACTTCCTTCTCTCCAATATCTTTATCTTCAACATAATAACCTCTCTGGTGATGTTCCTTCCTCCCTTTCACCAACTCTTGTTGTATTGAATCTGTCATTCAATTTATTAGAAGGAAAGATTCCAAAGACCGTACAAAATTTGACACAACTAACAGGATTGAACCTCCAAAACAACAATCTTTCCGGTTCTATACCAGATATCAATCTTCCTAAGCTTAAGCATCTCAATATAAGTTATAACCATCTTAATGGTTCTATTCCAACTTTTTTTAATACATTCCCAAATTCGTCCTTCATTGGCAATCCTTCATTATGTGGATCGCCTTTAAAAGCTTGCTCCATAGTCCTATCTCCAGCTCCTCATGCTCCACCTTCACCTGCCATTTCTCAAAAGCAGAGCTCCAAAAAGCTGAAGATGGGAGTTATCATTGCTATTGCAGTTGGTGGATTTTTCGTTCTTTTCCTTGTAGTCCTTTTTGTGGTCTTGTGCTGTTTAAAGAAAAAGGAGGGTGGAGATGCCGGTACAAGAAAAGGGAAGGTTTCTGGTGGTGGGAGGAGTGAAAAACCAAAAGAGGAGTTTGGTAGTGGTGTGCAGGAGCCCGAGAAAAACAAGCTAGTGTTTTTTGAAGGTTGTTCATTTAATTTCGATCTTGAAGACCTATTAAGGGCTTCAGCTGAAGTGCTTGGAAAGGGCAGCTATGGAACAGCTTATAAAGCTGTTTTGGAGGAACCTACCACTGTTGTGGTAAAAAGATTGAAGGAAGTGGTGGTGGGGAAGAGGGAATTTGAACAACAAATGGACATAGTGGGAAGGGTTGGGCAGCACCCGAATGTCATGCCACTCCGAGCATATTACTACTCAAAGGATGAAAAGCTCCTTGTTTATGATTATGTCCCAGGAGGCAGCTTGTCGTCACTCTTGCATGGAAACAGAGGAGGGGAAAGAACTCCACTTGACTGGGACTCAAGAGTGAAAATTGCTCTTGCAACAGCAAAGGGAATTGCTCATATTCATGCAATGGGTGGTCCAAAATTCACCCATGGAAATATCAAGGCCTCCAATGTTCTCCTAATTCAAGATGTCAATGCTTGTGTCTCTGACTTTGGCCTTACCCCTCTTATGAATGTCCCAACTTCTCGAACTGCAGGTTATCGTGCGCCTGAAGTAATCGAAGCTCGCAAACACACACACAAGTCAGATGTTTACAGTTTTGGCGTTCTTCTTCTTGAAATGTTAACTGGAAAAGCTCCTCTCCAATCACCTGGTCGTGATGAAATGGTAGATCTTCCTCGGTGGGTTCAATCGGTTGTGAGGGAGGAATGGACAGCAGAGGTTTTCGATGTTGAGCTAATGAGATACCAGAATATTGAAGAAGAGATGGTTCAAATGTTACAAATAGCAATGACCTGCGTAGCGAAGTTGCCCGACATGAGACCGAACATGGACGAAGTAGTTAGAATGATTGAAGAAATCCGGCAATCTGACTCGGAGAACCGGCCATCTTCCGAAGAGAACAAATCAAAGGACTCAAATGTGCAGACCCCATGA 1893 42.95 MKFCSASVLPLFFVIINLLHLAIADLESDKQALLDFASSVPHRRSLNWNDTTPICTSWVGVTCSADGTHVLTLRLPGIGLVGSIPSDTLGKLDGLKILSLRSNLLSGIIPSDITSLPSLQYLYLQHNNLSGDVPSSLSPTLVVLNLSFNLLEGKIPKTVQNLTQLTGLNLQNNNLSGSIPDINLPKLKHLNISYNHLNGSIPTFFNTFPNSSFIGNPSLCGSPLKACSIVLSPAPHAPPSPAISQKQSSKKLKMGVIIAIAVGGFFVLFLVVLFVVLCCLKKKEGGDAGTRKGKVSGGGRSEKPKEEFGSGVQEPEKNKLVFFEGCSFNFDLEDLLRASAEVLGKGSYGTAYKAVLEEPTTVVVKRLKEVVVGKREFEQQMDIVGRVGQHPNVMPLRAYYYSKDEKLLVYDYVPGGSLSSLLHGNRGGERTPLDWDSRVKIALATAKGIAHIHAMGGPKFTHGNIKASNVLLIQDVNACVSDFGLTPLMNVPTSRTAGYRAPEVIEARKHTHKSDVYSFGVLLLEMLTGKAPLQSPGRDEMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMTCVAKLPDMRPNMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP* 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9313912 9318154 + CsaV3_6G013190.1 Csa06g01121 532748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01121 630 Pfam Protein kinase domain 340 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa06g01121 630 MobiDBLite consensus disorder prediction 606 621 - -
Csa06g01121 630 Pfam Leucine rich repeat 82 129 IPR001611 GO:0005515
Csa06g01121 630 MobiDBLite consensus disorder prediction 606 630 - -
Csa06g01121 630 CDD STKc_IRAK 343 606 - -
Csa06g01121 630 Gene3D Ribonuclease Inhibitor 27 139 IPR032675 -
Csa06g01121 630 SUPERFAMILY Protein kinase-like (PK-like) 341 604 IPR011009 -
Csa06g01121 630 PANTHER OS05G0588300 PROTEIN 6 630 - -
Csa06g01121 630 PANTHER LRR RECEPTOR-LIKE KINASE 6 630 - -
Csa06g01121 630 ProSitePatterns Protein kinases ATP-binding region signature. 343 374 IPR017441 GO:0005524
Csa06g01121 630 MobiDBLite consensus disorder prediction 286 310 - -
Csa06g01121 630 Pfam Leucine Rich Repeat 186 204 IPR001611 GO:0005515
Csa06g01121 630 Gene3D Ribonuclease Inhibitor 140 228 IPR032675 -
Csa06g01121 630 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Csa06g01121 630 Gene3D Phosphorylase Kinase; domain 1 305 412 - -
Csa06g01121 630 SUPERFAMILY L domain-like 39 224 - -
Csa06g01121 630 Gene3D Transferase(Phosphotransferase) domain 1 413 629 - -
Csa06g01121 630 ProSiteProfiles Protein kinase domain profile. 337 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02093 Csa-Chr1:18117705 Csa06g01121 Csa-Chr6:9313912 0 dispersed
Csa02g00154 Csa-Chr2:1087160 Csa06g01121 Csa-Chr6:9313912 0 dispersed
Csa03g03364 Csa-Chr3:30424877 Csa06g01121 Csa-Chr6:9313912 1.09E-151 dispersed
Csa04g01704 Csa-Chr4:16425507 Csa06g01121 Csa-Chr6:9313912 0 dispersed
Csa05g00074 Csa-Chr5:375984 Csa06g01121 Csa-Chr6:9313912 3.12E-173 dispersed
Csa05g00862 Csa-Chr5:6592954 Csa06g01121 Csa-Chr6:9313912 6.64E-20 dispersed
Csa05g02914 Csa-Chr5:29618253 Csa06g01121 Csa-Chr6:9313912 4.22E-63 dispersed
Csa06g01121 Csa-Chr6:9313912 Csa05g00223 Csa-Chr5:1334228 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78344 PF00069 Pkinase 4.10E-37 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01121 - - csv:101221378 1191.02