Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01132 ATGATTCTACGCTCACAATCCTCCTCTGTTTTCACGCTTTCCTCTACAGTTGTTGACAATCACACGTTTAAGCTTCACCGGCGGCAACTTCAGCTTCGTGATTACGGCGATGACTGCCGTCACGGCCAGTTCCATGTTCGAGTTTCTAAAATTTTACTTTCGACGACTGCGGTTACGGTCCGTTCTACCAGCAGAAGTCTCGCTAGAAGGAAATCTAGGAATCGTTTTATCTATTTTAGGTCTTCTGCAAGTGCCTCCGATTTGTCCTCCACGACTCAGTCGCAGGATATTACAACTCCAGGTTCAGGTCCAGATAAGAATGAGGAAGCTCAGAGGCCTGGACCTGATCCGAAAATTCTTCTGAAGAGGTTTTGGAAAGTTGCCGCACCTTATTGGTTTTCGGATGATAAAGTGCAAGCTCGATGGCAGCTGGCTGCTGTCTTCGCTCTGACCTTGGGCACCACCGGCATCAGCGTTGGCTTCAATTTCCTTGGCCGCGACTTCTACAACGCTCTCGCTAACAAGGACCAAGAACAGTTCACTAAGCAGCTCCTTTACTACCTAGGTGCCTTTGCTGGAGGTATTCCGGTTTTTGTATTGAGAGATTACGCAAAGGACATGCTTTCCCTTAGATGGAGGTCATGGATGACTAAACATTACATGGAGCGTTATCTAAAGGACCAGTCTTTCTATAAAATTCAGTCCCAATCCATTATTGATAATCCAGATCAGCGGATTGTTGATGATCTCAGTTCTTTCACAGGGACAGCTCTTTCATTTTCTTTGGCACTCTTCAATTCTACAGTGGATTTAATTTCATTTAGTAACATCTTATATGGTATCTATCCACCGTTGTTTGTTATTCTTCTTGTATATTCGATAGGAGGAACGGCAATCAGTGTTTTCCTCGGAAAGGGTTTGGTTAATTTGAACTTCTTGCAAGAAAAGAAAGAAGCAGATTTTCGCTATGGACTTGTACGCATTCGTGAAAATGCTGAATCAATTGCTTTCTATGGTGGTGAAGAGAATGAGATGCAGCTTATTCTGCAACGTTTTAGAAGTGCTGTTGAGAATTTAACTAAATTACTAATATCATCCAGAAATCTCGAGTTCTTTACCAATGGCTATCGCTACCTTATTCAAATTCTTCCAGCTGCTGTTGTTGCCCCCATGTACTTTTCAGGAAAAATTGAGTTTGGTGTTATTAATCAATCAGTATCTGCTTTCAATCACATCCTGGGGGATTTTTCCATCATTGTATATCAGTTTCAAGCCATCAGTGCTTTTTCAGCAATTATTGATCGCCTAGGTGAATTTGATGATCTCTTGGATGGCAGTGCCCCTAAAGCTCTCTCTAACATTTCAGAAAAGATACATCTTATGTACTCCCATATGGAAAATTCACCTCTACTAGAATCAAATGGGTCCATAGCCCCAGACAAACGCCAGAAATTATTGGAGATAGAGAATATGACTTTGGGGGCACCAAATGGAGCAACATTGGTGAGAGACTTGACGCTGATAGTTAAAGAAAAGGAGCATTTGCTGGTAATGGGACCTAGTGGATGTGGCAAGACTTCTTTGCTAAGAGTTTTGGCTGGACTTTGGAATGTTGGAAAAGGAAAAATCACATTTTATATAAAAGACTATCCTGAGCAGTTAGTTTCTCAAAATGAAGGTCCCACCGGAGCACATACAGGAGAAGATGTATCCAAAGAAAATAGTAGACCACTCAACAAGAATTATCAAGGGATATTTTTTCTTCCTCAAAGACCATATATGGTTTTGGGTACACTACGTCAACAGCTGCTTTATCCTACATGGGCTGAAGGTTCTGTCACATCAGCAGGTGATGCTGAATCAAATGTATTCCCTTCCTTTTTGACAGGTGCGTCAAATATCAACAATGTTGGTGAAAATCCTGATAGGCCGTCAACGGATGACCTAATCCAAGTCCTGGATAAAGTGGGTCTTAGCTACCTATTGACTCGTTTCAGTAGTCTGGACATAATTTGTGAATGGTCCAGTGTTCTTTCTCTCGGTGAGCAACAACGAATTGCTTTTGCACGTTTATTGCTTTCAAGACCAAAGTTAGTCCTGCTGGATGAGTCTACAAGTGCTTTAGATGAAACGAATGAGGCACGTTTATACAAGCTAATCGCAGGTGCTGGGATAACATATATCAGCATTGGCCATCGAGGAACTTTACGTAATCACCATAACAGTATTTTGCATATATCAAAGTTGTCCGATGACAATCAACGCAACTGGAACATTGAACCCATTATTAGGGATGATTTGTACGAATTATCAAAGCAGTAA 2322 41.56 MILRSQSSSVFTLSSTVVDNHTFKLHRRQLQLRDYGDDCRHGQFHVRVSKILLSTTAVTVRSTSRSLARRKSRNRFIYFRSSASASDLSSTTQSQDITTPGSGPDKNEEAQRPGPDPKILLKRFWKVAAPYWFSDDKVQARWQLAAVFALTLGTTGISVGFNFLGRDFYNALANKDQEQFTKQLLYYLGAFAGGIPVFVLRDYAKDMLSLRWRSWMTKHYMERYLKDQSFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLALFNSTVDLISFSNILYGIYPPLFVILLVYSIGGTAISVFLGKGLVNLNFLQEKKEADFRYGLVRIRENAESIAFYGGEENEMQLILQRFRSAVENLTKLLISSRNLEFFTNGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSIIVYQFQAISAFSAIIDRLGEFDDLLDGSAPKALSNISEKIHLMYSHMENSPLLESNGSIAPDKRQKLLEIENMTLGAPNGATLVRDLTLIVKEKEHLLVMGPSGCGKTSLLRVLAGLWNVGKGKITFYIKDYPEQLVSQNEGPTGAHTGEDVSKENSRPLNKNYQGIFFLPQRPYMVLGTLRQQLLYPTWAEGSVTSAGDAESNVFPSFLTGASNINNVGENPDRPSTDDLIQVLDKVGLSYLLTRFSSLDIICEWSSVLSLGEQQRIAFARLLLSRPKLVLLDESTSALDETNEARLYKLIAGAGITYISIGHRGTLRNHHNSILHISKLSDDNQRNWNIEPIIRDDLYELSKQ* 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9400380 9408214 - CsaV3_6G013300.1 Csa06g01132 532759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01132 773 MobiDBLite consensus disorder prediction 87 105 - -
Csa06g01132 773 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 486 773 IPR003439 GO:0005524
Csa06g01132 773 CDD ABCD_peroxisomal_ALDP 486 748 - -
Csa06g01132 773 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 106 762 - -
Csa06g01132 773 Gene3D ABC transporter type 1, transmembrane domain 104 442 IPR036640 GO:0005524|GO:0016021
Csa06g01132 773 Pfam ABC transporter 503 706 IPR003439 GO:0005524
Csa06g01132 773 MobiDBLite consensus disorder prediction 87 116 - -
Csa06g01132 773 PANTHER ATP-BINDING CASSETTE SUB-FAMILY D MEMBER 3 106 762 - -
Csa06g01132 773 ProSitePatterns ABC transporters family signature. 678 692 IPR017871 GO:0005524
Csa06g01132 773 Gene3D - 476 754 IPR027417 -
Csa06g01132 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 746 IPR027417 -
Csa06g01132 773 SMART AAA_5 511 750 IPR003593 -
Csa06g01132 773 Pfam ABC transporter transmembrane region 2 133 393 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Csa06g01132 773 SUPERFAMILY ABC transporter transmembrane region 118 439 IPR036640 GO:0005524|GO:0016021
Csa06g01132 773 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 145 428 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00894 Csa-Chr4:6444526 Csa06g01132 Csa-Chr6:9400380 3.25E-47 dispersed
Csa06g01132 Csa-Chr6:9400380 Csa02g02749 Csa-Chr2:23934159 4.31E-08 dispersed
Csa06g01132 Csa-Chr6:9400380 Csa03g03293 Csa-Chr3:30032241 1.52E-14 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01132 - - csv:101204943 1493.4