Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa06g01133 ATGTCATTGCCATGGTGGATCTCCCCCACCGCCGTTCCTTTTCCATCTCAGACACAGCTAATTTCTCATCCTTACCAACACCACTCTCACATTCGTCTCAGAAAATTAAGCTCTTCTCCTTCAACTTCCACCGCTCCCAGAGCTGTATTGCTTGACGAAATCGTTCAACTTACCCACAACAAGGTTTTAGTTGCCGCCGGTGTGTCCGCTGCAATTGGGCAGCTCGCCAAGCCTTTCACGTCTGTTGTTTTCTATGGCAGAGAGTTTAACATCAGAACTGCCTTTGAGGCTGGAGGTTTCCCTTCAACCCATTCCTCTGCCGTGGTTGCTGCTGCTACAATCCTTGGTGCTGAGAGGGGTCTTGCCGATTCCATTTTTGGCATAACTGTAGTTTACGCGTCTCTTATTATGTATGATGCTCAGGCAATCAGGAGAGAAGTTGGAAAACATTCTAAAGCCCTCAACAAGCTGTCACAAACAGAGAGACCAATGAACTCATCATTTCCCTACAAAGATGAAGACCTTCGAGTCGATTCCCAACTCGAAAAGAGAATATCATCGTCGCTCAATAGAAATCTTGAGATTGGCAGTCCCATGTTATCCGAGGAATCAACCAAGGCCCTAACAGTACCGAGTCCAGTAAAGCAGGATGTCACAACCTCAAGCGTAGCAAATGATTTGGAAGGAGGATCAAGAATGGAAGCTAGTAGTAGTTGGAAGCCATTTAAAGAGTCAATAGGGCACACTGAGATTGAAGTCGCAGCTGGTGCTTTGTTGGGCTTCACGGTTAGTCTTATTACCAATTCTTTGTTGTGA 816 46.08 MSLPWWISPTAVPFPSQTQLISHPYQHHSHIRLRKLSSSPSTSTAPRAVLLDEIVQLTHNKVLVAAGVSAAIGQLAKPFTSVVFYGREFNIRTAFEAGGFPSTHSSAVVAAATILGAERGLADSIFGITVVYASLIMYDAQAIRREVGKHSKALNKLSQTERPMNSSFPYKDEDLRVDSQLEKRISSSLNRNLEIGSPMLSEESTKALTVPSPVKQDVTTSSVANDLEGGSRMEASSSWKPFKESIGHTEIEVAAGALLGFTVSLITNSLL* 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 9410941 9415460 - CsaV3_6G013310.1 Csa06g01133 532760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa06g01133 271 MobiDBLite consensus disorder prediction 204 227 - -
Csa06g01133 271 Pfam Divergent PAP2 family 59 263 IPR003832 -
Csa06g01133 271 PANTHER ACID PHOSPHATASE/VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 26 270 - -
Csa06g01133 271 CDD PAP2_like 62 138 - -
Csa06g01133 271 MobiDBLite consensus disorder prediction 204 234 - -
Csa06g01133 271 PANTHER ACID PHOSPHATASE/VANADIUM-DEPENDENT HALOPEROXIDASE-RELATED PROTEIN 26 270 IPR003832 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa06g01133 - - - csv:101219161 502.671
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02230 Csa-Chr5:25049186 Csa06g01133 Csa-Chr6:9410941 3.18E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1192 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g01847 Cam02g1953 Cec02g1981 Cco02g2019 Clacu02g1935 Cmu02g1884 Cre02g2195 . . . . . . . Cme11g01667 . . . . . . . . Sed05g3325 . . . . . . . Cpe05g01020 Bhi10g00910 Tan05g0566 Cmetu11g2473 . Hepe08g0665 . . . . . . . . . . Csa06g01133 Chy11g01061 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011496 0 1 0 0 1 1 0 1 1 1 1 1 3 1 1 1 1 2 3 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Csa06g01133 Csa_Chr06 FPKM 28.680246 32.786488 21.620857 22.117268 28.137142 26.313627 28.312813 21.462643 22.194313 22.291359